myRT

myRT report for GCA_000356565.1_ASM35656v1

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Seq: AQEM01000015.1 Escherichia coli P0304816.1 gecP03048161.contig.14, whole genome shotgun sequence (35610 bp)
Overview 1 RT 1: 23554-27510 bp 2 RT 2: 29789-34327 bp Neighborhood of RT #1 [23554, 27635] RVT_N RVT-GII GIIM HNHc DUF1380 Neighborhood of RT #2 [29789, 34386] PRK13699 RVT_N RVT-GII GIIM HNHc DUF1281 DUF1281_C Feature: gene Location: 23554-23841 bp Feature: gene Location: 24108-24320 bp Feature: gene Location: 25044-26711 bp Ori: ENA01672.1 Feature: domain Description: RVT_N Location: 25092-25329 bp Feature: domain Description: RVT_N Location: 25092-25329 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25380-26022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25380-26022 bp Feature: domain Description: GIIM Note: maturase Location: 26073-26307 bp Feature: domain Description: GIIM Note: maturase Location: 26073-26307 bp Feature: domain Description: HNHc Note: nucleases Location: 26517-26676 bp Feature: domain Description: HNHc Note: nucleases Location: 2651 7-26676 bp Feature: gene Location: 27025-27216 bp Feature: gene Location: 27213-27635 bp Ori: ENA01674.1 Feature: domain Description: DUF1380 Location: 27216-27510 bp Feature: domain Description: DUF1 380 Location: 2721 6-2751 0 bp Feature: gene Location: 29789-30010 bp Feature: gene Location: 30011-30523 bp Ori: ENA01679.1 Feature: domain Description: PRK13699 Location: 30014-30521 bp Feature: domain Description: PRK1 3699 Location: 3001 4-30521 bp Feature: gene Location: 31287-32945 bp Ori: ENA01680.1 Feature: domain Description: RVT_N Location: 31299-31542 bp Feature: domain Description: RVT_N Location: 31 299-31 542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31587-32223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 587-32223 bp Feature: domain Description: GIIM Note: maturase Location: 32274-32508 bp Feature: domain Description: GIIM Note: maturase Location: 32274-32508 bp Feature: domain Description: HNHc Note: nucleases Location: 32739-32889 bp Feature: domain Description: HNHc Note: nucleases Location: 32739-32889 bp Feature: gene Location: 33206-33331 bp Feature: gene Location: 33484-34386 bp Ori: ENA01682.1 Feature: domain Description: DUF1281 Location: 33553-34081 bp Feature: domain Description: DUF1 281 Location: 33553-34081 bp Feature: domain Description: DUF1281_C Location: 34087-34327 bp Feature: domain Description: DUF1 281 _C Location: 34087-34327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), PRK13699 (putative methylase; Provisional), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: AQEM01000004.1 Escherichia coli P0304816.1 gecP03048161.contig.3, whole genome shotgun sequence (33931 bp)
Overview 1 RT 1: 24204-27576 bp Neighborhood of RT #1 [24204, 27576] Ogr_Delta D RVT-GII GIIM Feature: gene Location: 24204-24464 bp Ori: ENA04266.1 Feature: domain Description: Ogr_Delta Location: 24213-24354 bp Feature: domain Description: Ogr_Delta Location: 2 42 13-2 4354 bp Feature: gene Location: 24507-24878 bp Ori: ENA04267.1 Feature: domain Description: D Location: 24537-24852 bp Feature: domain Description: D Location: 2 4537-2 4852 bp Feature: gene Location: 25016-26347 bp Ori: ENA04268.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25301-25988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5301-2 5988 bp Feature: domain Description: GIIM Note: maturase Location: 26105-26273 bp Feature: domain Description: GIIM Note: maturase Location: 2 6105-2 62 73 bp Feature: gene Location: 27050-27211 bp Feature: gene Location: 27229-27576 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), D (PHA02561), RVT-GII, GIIM (pfam08388)

Seq: AQEM01000028.1 Escherichia coli P0304816.1 gecP03048161.contig.27, whole genome shotgun sequence (503352 bp)
Overview 1 RT 1: 48040-58239 bp Neighborhood of RT #1 [48040, 58239] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Feature: gene Location: 48040-48312 bp Feature: gene Location: 48765-49535 bp Feature: gene Location: 49597-51306 bp Ori: EMZ99284.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49750-50347 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49750-503 47 bp Feature: gene Location: 51443-51940 bp Feature: gene Location: 52180-52641 bp Ori: EMZ99286.1 Gene: ahdIC Feature: domain Description: HTH_XRE Location: 52210-52378 bp Feature: domain Description: HTH_XRE Location: 52210-523 78 bp Feature: gene Location: 52672-53853 bp Ori: EMZ99287.1 Feature: domain Description: DUF4062 Location: 52687-53014 bp Feature: domain Description: DUF4062 Location: 52687-53 014 bp Feature: gene Location: 54562-55746 bp Ori: EMZ99288.1 Feature: domain Description: PRK09692 Location: 54568-55723 bp Feature: domain Description: PRK09692 Location: 54568-55723 bp Feature: gene Location: 55739-57367 bp Ori: EMZ99289.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 56147-56576 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 56147-56576 bp Feature: gene Location: 57364-58104 bp Feature: gene Location: 58120-58239 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7