myRT

myRT report for GCA_000356605.2_ASM35660v2

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Seq: AQEK01000005.1 Escherichia coli p0305293.1 gecp03052931.contig.4, whole genome shotgun sequence (6491 bp)
Overview 1 RT 1: 3802-6354 bp Neighborhood of RT #1 [3802, 6428] rve_3 DDE_Tnp_Tn3 RVT-GII GIIM Feature: gene Location: 3802-4089 bp Feature: domain Description: rve_3 Location: 3850-3931 bp Feature: domain Description: rve_3 Location: 3850-3931 bp Feature: gene Location: 4379-4594 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 4382-4514 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 4382-451 4 bp Feature: gene Location: 5097-6428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5382-6069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5382-6069 bp Feature: domain Description: GIIM Note: maturase Location: 6186-6354 bp Feature: domain Description: GIIM Note: maturase Location: 61 86-6354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_3 (pfam13683), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388)

Seq: AQEK01000033.1 Escherichia coli p0305293.1 gecp03052931.contig.32, whole genome shotgun sequence (30893 bp)
Overview 1 RT 1: 10379-14706 bp Neighborhood of RT #1 [10379, 14816] Phage_integrase RVT-GII GIIM D Ogr_Delta Feature: gene Location: 10379-11176 bp Feature: domain Description: Phage_integrase Location: 10511-11090 bp Feature: domain Description: Phage_integrase Location: 10511-11090 bp Feature: gene Location: 11173-11862 bp Feature: gene Location: 12673-14004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12958-13645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 958-13645 bp Feature: domain Description: GIIM Note: maturase Location: 13762-13930 bp Feature: domain Description: GIIM Note: maturase Location: 13762 -13930 bp Feature: gene Location: 14142-14513 bp Feature: domain Description: D Location: 14172-14487 bp Feature: domain Description: D Location: 14172 -14487 bp Feature: gene Location: 14556-14816 bp Feature: domain Description: Ogr_Delta Location: 14565-14706 bp Feature: domain Description: Ogr_Delta Location: 14565-14706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-GII, GIIM (pfam08388), D (PHA02561), Ogr_Delta (pfam04606)

Seq: AQEK01000027.1 Escherichia coli p0305293.1 gecp03052931.contig.26, whole genome shotgun sequence (44844 bp)
Overview 1 RT 1: 130-4071 bp Neighborhood of RT #1 [130, 4082] PRK09183 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 130-699 bp Feature: domain Description: PRK09183 Location: 133-697 bp Feature: domain Description: PRK09183 Location: 13 3 -697 bp Feature: gene Location: 743-1093 bp Feature: domain Description: PHA02517 Location: 746-1067 bp Feature: domain Description: PHA02517 Location: 746-1067 bp Feature: gene Location: 1216-2724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1474-2206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1474-2206 bp Feature: domain Description: GIIM Note: maturase Location: 2281-2479 bp Feature: domain Description: GIIM Note: maturase Location: 2281-2479 bp Feature: gene Location: 3331-3750 bp Feature: domain Description: PHA02517 Location: 3346-3685 bp Feature: domain Description: PHA02517 Location: 3 3 46-3 685 bp Feature: gene Location: 3798-4082 bp Feature: domain Description: InsE Location: 3810-4071 bp Feature: domain Description: InsE Location: 3 810-4071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09183 (transposase/IS protein; Provisional), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: AQEK01000034.1 Escherichia coli p0305293.1 gecp03052931.contig.33, whole genome shotgun sequence (58018 bp)
Overview 1 RT 1: 575-7701 bp 2 RT 2: 27818-32295 bp Neighborhood of RT #1 [575, 7724] RVT-GII GIIM Peptidase_S6 autotrans_barl HTH_23 InsE Neighborhood of RT #2 [27818, 33032] RVT_N RVT-GII GIIM HNHc DUF3560 Feature: gene Location: 575-1906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 860-1547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 860-154 7 bp Feature: domain Description: GIIM Note: maturase Location: 1664-1832 bp Feature: domain Description: GIIM Note: maturase Location: 1664 -1832 bp Feature: gene Location: 2705-6799 bp Feature: domain Description: Peptidase_S6 Location: 2858-5042 bp Feature: domain Description: Peptidase_S6 Location: 2858-504 2 bp Feature: domain Description: autotrans_barl Location: 5576-6797 bp Feature: domain Description: autotrans_barl Location: 5576-6797 bp Feature: gene Location: 7047-7724 bp Feature: domain Description: HTH_23 Location: 7107-7218 bp Feature: domain Description: HTH_23 Location: 7107-7218 bp Feature: domain Description: InsE Location: 7350-7701 bp Feature: domain Description: InsE Location: 7350-7701 bp Feature: gene Location: 27818-28009 bp Feature: gene Location: 28023-28178 bp Feature: gene Location: 28322-29989 bp Feature: RT Description: RVT_N Location: 28370-28607 bp Feature: RT Description: RVT_N Location: 28370-28607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28658-29300 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28658-29300 bp Feature: domain Description: GIIM Note: maturase Location: 29351-29585 bp Feature: domain Description: GIIM Note: maturase Location: 29351-29585 bp Feature: domain Description: HNHc Note: nucleases Location: 29795-29954 bp Feature: domain Description: HNHc Note: nucleases Location: 29795-29954 bp Feature: gene Location: 31152-31292 bp Feature: gene Location: 31671-33032 bp Feature: domain Description: DUF3560 Location: 31938-32295 bp Feature: domain Description: DUF3560 Location: 31938-32295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), HNHc (smart00507), DUF3560 (pfam12083)