myRT

myRT report for GCA_000356625.2_ASM35662v2

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Seq: AQFE01000011.1 Escherichia coli 2726800 gec2726800.contig.10, whole genome shotgun sequence (325552 bp)
Overview 1 RT 1: 121-2549 bp Neighborhood of RT #1 [121, 2560] RVT-GII RVT-GII PHA02517 InsE Feature: gene Location: 121-297 bp Ori: EMX81716.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136-208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36-208 bp Feature: gene Location: 279-1199 bp Ori: EMX81793.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 537-993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 537-993 bp Feature: gene Location: 1806-2231 bp Ori: EMX81885.1 Feature: domain Description: PHA02517 Location: 1830-2166 bp Feature: domain Description: PHA0251 7 Location: 1 830-21 66 bp Feature: gene Location: 2258-2560 bp Ori: EMX81846.1 Feature: domain Description: InsE Location: 2267-2549 bp Feature: domain Description: InsE Location: 2267-2549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: AQFE01000028.1 Escherichia coli 2726800 gec2726800.contig.27, whole genome shotgun sequence (210989 bp)
Overview 1 RT 1: 1-2589 bp Neighborhood of RT #1 [1, 2600] RVT-GII GIIM RVT-GII PHA02517 InsE Feature: gene Location: 1-425 bp Ori: EMX78450.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-178 bp Feature: domain Description: GIIM Note: maturase Location: 295-421 bp Feature: domain Description: GIIM Note: maturase Location: 2 95-42 1 bp Feature: gene Location: 484-1239 bp Ori: EMX78549.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742-1198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 742 -1198 bp Feature: gene Location: 1846-2271 bp Ori: EMX78595.1 Feature: domain Description: PHA02517 Location: 1870-2206 bp Feature: domain Description: PHA02 517 Location: 1870-2 2 06 bp Feature: gene Location: 2298-2600 bp Ori: EMX78574.1 Feature: domain Description: InsE Location: 2307-2589 bp Feature: domain Description: InsE Location: 2 307-2 589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: AQFE01000050.1 Escherichia coli 2726800 gec2726800.contig.49, whole genome shotgun sequence (90602 bp)
Overview 1 RT 1: 87338-90134 bp Neighborhood of RT #1 [87338, 90379] PHA02517 RVT-GII GIIM Feature: gene Location: 87338-87787 bp Feature: gene Location: 88293-88664 bp Ori: EMX69836.1 Feature: domain Description: PHA02517 Location: 88296-88662 bp Feature: domain Description: PHA02517 Location: 88296-88662 bp Feature: gene Location: 88856-90379 bp Ori: EMX69854.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89129-89861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89129-89861 bp Feature: domain Description: GIIM Note: maturase Location: 89936-90134 bp Feature: domain Description: GIIM Note: maturase Location: 8993 6-9013 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AQFE01000031.1 Escherichia coli 2726800 gec2726800.contig.30, whole genome shotgun sequence (23039 bp)
Overview 1 RT 1: 18225-22702 bp Neighborhood of RT #1 [18225, 22947] HNH AAA_21 AAA_21 RVT-GII GIIM Feature: gene Location: 18225-19094 bp Ori: EMX76216.1 Feature: domain Description: HNH Note: nucleases Location: 18522-18639 bp Feature: domain Description: HNH Note: nucleases Location: 18522-18639 bp Feature: gene Location: 19100-20578 bp Ori: EMX76209.1 Feature: domain Description: AAA_21 Location: 19640-19907 bp Feature: domain Description: AAA_21 Location: 1964 0-19907 bp Feature: domain Description: AAA_21 Location: 19976-20303 bp Feature: domain Description: AAA_21 Location: 19976-20303 bp Feature: gene Location: 21439-22947 bp Ori: EMX76210.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21697-22429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21697-224 29 bp Feature: domain Description: GIIM Note: maturase Location: 22504-22702 bp Feature: domain Description: GIIM Note: maturase Location: 22504 -22702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNH (pfam01844), AAA_21 (pfam13304), RVT-GII, GIIM (pfam08388)

Seq: AQFE01000030.1 Escherichia coli 2726800 gec2726800.contig.29, whole genome shotgun sequence (672596 bp)
Overview 1 RT 1: 1-2560 bp Neighborhood of RT #1 [1, 2571] RVT-GII PHA02517 InsE Feature: gene Location: 1-1210 bp Ori: EMX76713.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 9-991 bp Feature: gene Location: 1817-2242 bp Ori: EMX76870.1 Feature: domain Description: PHA02517 Location: 1841-2177 bp Feature: domain Description: PHA025 17 Location: 1841-2177 bp Feature: gene Location: 2269-2571 bp Ori: EMX76839.1 Feature: domain Description: InsE Location: 2278-2560 bp Feature: domain Description: InsE Location: 2278-25 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: AQFE01000014.1 Escherichia coli 2726800 gec2726800.contig.13, whole genome shotgun sequence (18892 bp)
Overview 1 RT 1: 16746-18821 bp Neighborhood of RT #1 [16746, 18892] InsE PHA02517 RVT-GII Feature: gene Location: 16746-17048 bp Ori: EMX81028.1 Feature: domain Description: InsE Location: 16755-17037 bp Feature: domain Description: InsE Location: 16 755-17037 bp Feature: gene Location: 17075-17500 bp Ori: EMX81011.1 Feature: domain Description: PHA02517 Location: 17099-17435 bp Feature: domain Description: PHA02517 Location: 17099-17435 bp Feature: gene Location: 18107-18892 bp Ori: EMX81013.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18365-18821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1836 5-18821 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: AQFE01000047.1 Escherichia coli 2726800 gec2726800.contig.46, whole genome shotgun sequence (15523 bp)
Overview 1 RT 1: 11872-15398 bp Neighborhood of RT #1 [11872, 15400] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 11872-12000 bp Feature: gene Location: 11966-12337 bp Ori: EMX70049.1 Feature: domain Description: PHA02517 Location: 11969-12335 bp Feature: domain Description: PHA02517 Location: 11969-12335 bp Feature: gene Location: 12529-14037 bp Ori: EMX70061.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12787-13519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127 87 -13519 bp Feature: domain Description: GIIM Note: maturase Location: 13594-13792 bp Feature: domain Description: GIIM Note: maturase Location: 13594-137 92 bp Feature: gene Location: 14646-15125 bp Ori: EMX70045.1 Feature: domain Description: PHA02517 Location: 14706-15060 bp Feature: domain Description: PHA02517 Location: 147 06-15060 bp Feature: gene Location: 15125-15400 bp Ori: EMX70055.1 Feature: domain Description: InsE Location: 15167-15398 bp Feature: domain Description: InsE Location: 15167 -15398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: AQFE01000049.1 Escherichia coli 2726800 gec2726800.contig.48, whole genome shotgun sequence (15559 bp)
Overview 1 RT 1: 11564-15479 bp Neighborhood of RT #1 [11564, 15487] Phytase-like RVT-GII GIIM RVT-GII RVT-GII Feature: gene Location: 11564-11773 bp Feature: gene Location: 12152-13555 bp Ori: EMX69935.1 Feature: domain Description: Phytase-like Location: 12311-13325 bp Feature: domain Description: Phytase-like Location: 12311-13325 bp Feature: gene Location: 13979-14812 bp Ori: EMX69936.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13985-14294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1398 5-14294 bp Feature: domain Description: GIIM Note: maturase Location: 14369-14588 bp Feature: domain Description: GIIM Note: maturase Location: 14369-1458 8 bp Feature: gene Location: 15036-15161 bp Ori: EMX69923.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15042-15123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15042-15123 bp Feature: gene Location: 15155-15487 bp Ori: EMX69931.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15413-15479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15413-15479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phytase-like (pfam13449), RVT-GII, GIIM (pfam08388)

Seq: AQFE01000032.1 Escherichia coli 2726800 gec2726800.contig.31, whole genome shotgun sequence (84669 bp)
Overview 1 RT 1: 1-2209 bp 2 RT 2: 41788-46139 bp 3 RT 3: 79814-84417 bp Neighborhood of RT #1 [1, 2220] RVT-GII PHA02517 InsE Neighborhood of RT #2 [41788, 46150] PRK10724 SmpB RVT-UG11 PRK09678 D Neighborhood of RT #3 [79814, 84662] RVT-GII GIIM Feature: gene Location: 1-710 bp Ori: EMX76082.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109 -709 bp Feature: gene Location: 1466-1891 bp Ori: EMX76127.1 Feature: domain Description: PHA02517 Location: 1490-1826 bp Feature: domain Description: PHA02517 Location: 149 0-1826 bp Feature: gene Location: 1918-2220 bp Ori: EMX76066.1 Feature: domain Description: InsE Location: 1927-2209 bp Feature: domain Description: InsE Location: 19 27-2209 bp Feature: gene Location: 41788-42177 bp Ori: EMX76132.1 Gene: ratA Feature: domain Description: PRK10724 Location: 41791-42175 bp Feature: domain Description: PRK10724 Location: 4179 1-42175 bp Feature: gene Location: 42396-42878 bp Ori: EMX76155.1 Gene: smpB Feature: domain Description: SmpB Location: 42426-42873 bp Feature: domain Description: SmpB Location: 42426-42873 bp Feature: gene Location: 43564-44337 bp Ori: EMX76147.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 43699-44152 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 4369 9 -44152 bp Feature: gene Location: 44741-44959 bp Ori: EMX76143.1 Feature: domain Description: PRK09678 Location: 44744-44942 bp Feature: domain Description: PRK09 678 Location: 44744-449 42 bp Feature: gene Location: 45050-46150 bp Ori: EMX76063.1 Feature: domain Description: D Location: 45062-46139 bp Feature: domain Description: D Location: 45062-46139 bp Feature: gene Location: 79814-80908 bp Feature: gene Location: 80908-82065 bp Feature: gene Location: 83154-84662 bp Ori: EMX76091.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83412-84144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83412-84144 bp Feature: domain Description: GIIM Note: maturase Location: 84219-84417 bp Feature: domain Description: GIIM Note: maturase Location: 84219 -84417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), PRK10724 (type II toxin-antitoxin system RatA family toxin), SmpB (pfam01668), RVT-UG11, PRK09678 (DNA-binding transcriptional regulator; Provisional), D (PHA02561), GIIM (pfam08388)

Seq: AQFE01000027.1 Escherichia coli 2726800 gec2726800.contig.26, whole genome shotgun sequence (96157 bp)
Overview 1 RT 1: 92187-95617 bp Neighborhood of RT #1 [92187, 95619] InsE PHA02517 RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 92187-92462 bp Ori: EMX78773.1 Feature: domain Description: InsE Location: 92229-92460 bp Feature: domain Description: InsE Location: 92229-92460 bp Feature: gene Location: 92462-92941 bp Ori: EMX78735.1 Feature: domain Description: PHA02517 Location: 92522-92876 bp Feature: domain Description: PHA02517 Location: 92522-92876 bp Feature: gene Location: 93549-95057 bp Ori: EMX78814.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93807-94539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93807-94539 bp Feature: domain Description: GIIM Note: maturase Location: 94614-94812 bp Feature: domain Description: GIIM Note: maturase Location: 94614-94812 bp Feature: gene Location: 95249-95452 bp Ori: EMX78812.1 Feature: domain Description: PHA02517 Location: 95252-95447 bp Feature: domain Description: PHA02517 Location: 95252-95447 bp Feature: gene Location: 95485-95619 bp Ori: EMX78748.1 Feature: domain Description: PHA02517 Location: 95488-95617 bp Feature: domain Description: PHA02517 Location: 95488-95617 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AQFE01000015.1 Escherichia coli 2726800 gec2726800.contig.14, whole genome shotgun sequence (315458 bp)
Overview 1 RT 1: 57-5768 bp Neighborhood of RT #1 [57, 5821] RVT-GII GIIM TcfC CooC_C Feature: gene Location: 57-1565 bp Ori: EMX80727.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315-1047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 315-1047 bp Feature: domain Description: GIIM Note: maturase Location: 1122-1320 bp Feature: domain Description: GIIM Note: maturase Location: 11 22-1320 bp Feature: gene Location: 2110-3306 bp Feature: gene Location: 3296-5821 bp Ori: EMX80815.1 Feature: domain Description: TcfC Location: 4145-4346 bp Feature: domain Description: TcfC Location: 4145-4346 bp Feature: domain Description: CooC_C Location: 5492-5768 bp Feature: domain Description: CooC_C Location: 5492-5768 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TcfC (pfam16967), CooC_C (pfam15976)

Seq: AQFE01000005.1 Escherichia coli 2726800 gec2726800.contig.4, whole genome shotgun sequence (7941 bp)
Overview 1 RT 1: 1-2441 bp Neighborhood of RT #1 [1, 2443] RVT-GII PHA02517 InsE Feature: gene Location: 1-1081 bp Ori: EMX82363.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-991 bp Feature: gene Location: 1689-2168 bp Ori: EMX82361.1 Feature: domain Description: PHA02517 Location: 1749-2103 bp Feature: domain Description: PHA02517 Location: 1749-2103 bp Feature: gene Location: 2168-2443 bp Ori: EMX82357.1 Feature: domain Description: InsE Location: 2189-2441 bp Feature: domain Description: InsE Location: 2189-2441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: AQFE01000046.1 Escherichia coli 2726800 gec2726800.contig.45, whole genome shotgun sequence (282942 bp)
Overview 1 RT 1: 280498-282852 bp Neighborhood of RT #1 [280498, 282942] InsE PHA02517 RVT-GII Feature: gene Location: 280498-280800 bp Ori: EMX70537.1 Feature: domain Description: InsE Location: 280507-280789 bp Feature: domain Description: InsE Location: 280507-280789 bp Feature: gene Location: 280827-281252 bp Ori: EMX70684.1 Feature: domain Description: PHA02517 Location: 280851-281187 bp Feature: domain Description: PHA02517 Location: 280851-281187 bp Feature: gene Location: 281859-282942 bp Ori: EMX70772.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282117-282852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 282117-282852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII

Seq: AQFE01000029.1 Escherichia coli 2726800 gec2726800.contig.28, whole genome shotgun sequence (207073 bp)
Overview 1 RT 1: 202110-206393 bp Neighborhood of RT #1 [202110, 206638] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM Feature: gene Location: 202110-203723 bp Ori: EMX77992.1 Feature: domain Description: LZ_Tnp_IS66 Location: 202290-202500 bp Feature: domain Description: LZ_Tnp_IS66 Location: 202290-202500 bp Feature: domain Description: zf-IS66 Location: 202524-202656 bp Feature: domain Description: zf-IS66 Location: 202524-202656 bp Feature: domain Description: DDE_Tnp_IS66 Location: 202701-203568 bp Feature: domain Description: DDE_Tnp_IS66 Location: 202701-203568 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 203592-203700 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 203592-203700 bp Feature: gene Location: 204068-204328 bp Feature: gene Location: 205130-206638 bp Ori: EMX77853.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205388-206120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 205388-206120 bp Feature: domain Description: GIIM Note: maturase Location: 206195-206393 bp Feature: domain Description: GIIM Note: maturase Location: 206195-206393 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)