myRT

myRT report for GCA_000356665.2_ASM35666v2

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Seq: AQER01000004.1 Escherichia coli P0299917.1 gecP02999171.contig.3, whole genome shotgun sequence (382938 bp)
Overview 1 RT 1: 86707-92392 bp Neighborhood of RT #1 [86707, 92392] Psu PRK09678 RVT-UG3 RVT-UG8 Feature: gene Location: 86707-87258 bp Ori: ENA10275.1 Feature: domain Description: Psu Location: 86728-87238 bp Feature: domain Description: Psu Location: 86728-87238 bp Feature: gene Location: 87264-87536 bp Ori: ENA10276.1 Feature: domain Description: PRK09678 Location: 87273-87438 bp Feature: domain Description: PRK09678 Location: 87273-87438 bp Feature: gene Location: 87931-89208 bp Ori: ENA10277.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 88219-88714 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 8821 9-8871 4 bp Feature: gene Location: 89199-91217 bp Ori: ENA10278.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 89772-90225 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 89772-90225 bp Feature: gene Location: 91219-91332 bp Feature: gene Location: 92240-92392 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Psu (pfam07455), PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-UG3, RVT-UG8

Seq: AQER01000040.1 Escherichia coli P0299917.1 gecP02999171.contig.39, whole genome shotgun sequence (35021 bp)
Overview 1 RT 1: 774-3518 bp Neighborhood of RT #1 [774, 3538] RVT_N RVT-GII GIIM HNHc HTH_23 InsE Feature: gene Location: 774-2441 bp Ori: EMZ98291.1 Feature: domain Description: RVT_N Location: 822-1059 bp Feature: domain Description: RVT_N Location: 82 2 -1059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1110-1752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1110-1752 bp Feature: domain Description: GIIM Note: maturase Location: 1803-2037 bp Feature: domain Description: GIIM Note: maturase Location: 1803-2 037 bp Feature: domain Description: HNHc Note: nucleases Location: 2247-2406 bp Feature: domain Description: HNHc Note: nucleases Location: 2 2 47-2 406 bp Feature: gene Location: 2419-2856 bp Feature: gene Location: 2888-3538 bp Ori: EMZ98293.1 Feature: domain Description: HTH_23 Location: 2939-3038 bp Feature: domain Description: HTH_2 3 Location: 2 939-3038 bp Feature: domain Description: InsE Location: 3164-3518 bp Feature: domain Description: InsE Location: 3164-3518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), HTH_23 (pfam13384), InsE (COG2963)

Seq: AQER01000012.1 Escherichia coli P0299917.1 gecP02999171.contig.11, whole genome shotgun sequence (308352 bp)
Overview 1 RT 1: 167601-173380 bp Neighborhood of RT #1 [167601, 173382] TmcA YpfJ RVT_N RVT-GII GIIM HNHc Zn_peptidase PRK13725 Feature: gene Location: 167601-169616 bp Ori: ENA06793.1 Gene: tmcA Feature: domain Description: TmcA Location: 167607-169614 bp Feature: domain Description: TmcA Location: 167607-169614 bp Feature: gene Location: 169631-169960 bp Ori: ENA06794.1 Feature: domain Description: YpfJ Location: 169652-169955 bp Feature: domain Description: YpfJ Location: 169652-169955 bp Feature: gene Location: 170024-171691 bp Ori: ENA06795.1 Feature: domain Description: RVT_N Location: 170072-170309 bp Feature: domain Description: RVT_N Location: 170072-1703 09 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 170360-171002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1703 60-171002 bp Feature: domain Description: GIIM Note: maturase Location: 171053-171287 bp Feature: domain Description: GIIM Note: maturase Location: 171053 -171287 bp Feature: domain Description: HNHc Note: nucleases Location: 171497-171656 bp Feature: domain Description: HNHc Note: nucleases Location: 171497-171656 bp Feature: gene Location: 172265-172837 bp Ori: ENA06796.1 Feature: domain Description: Zn_peptidase Location: 172268-172826 bp Feature: domain Description: Zn_peptidase Location: 172268-172826 bp Feature: gene Location: 172984-173382 bp Ori: ENA06797.1 Feature: domain Description: PRK13725 Location: 172987-173380 bp Feature: domain Description: PRK13 725 Location: 172987-173 3 80 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TmcA (COG1444), YpfJ (COG2321), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Zn_peptidase (pfam04228), PRK13725 (tRNA(fMet)-specific endonuclease VapC)

Seq: AQER01000016.1 Escherichia coli P0299917.1 gecP02999171.contig.15, whole genome shotgun sequence (49673 bp)
Overview 1 RT 1: 43032-47114 bp Neighborhood of RT #1 [43032, 47114] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 43032-43223 bp Feature: gene Location: 43294-43428 bp Feature: gene Location: 43501-45168 bp Ori: ENA03580.1 Feature: domain Description: RVT_N Location: 43549-43786 bp Feature: domain Description: RVT_N Location: 4 354 9-4 3786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43837-44479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 3837-4 4 4 79 bp Feature: domain Description: GIIM Note: maturase Location: 44530-44764 bp Feature: domain Description: GIIM Note: maturase Location: 4 4 530-4 4 764 bp Feature: domain Description: HNHc Note: nucleases Location: 44974-45133 bp Feature: domain Description: HNHc Note: nucleases Location: 4 4 974 -4 5133 bp Feature: gene Location: 46320-46754 bp Feature: gene Location: 46848-47114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQER01000046.1 Escherichia coli P0299917.1 gecP02999171.contig.45, whole genome shotgun sequence (9169 bp)
Overview 1 RT 1: 5492-9159 bp Neighborhood of RT #1 [5492, 9159] RVT_N RVT_N RVT-GII GIIM HNHc Feature: gene Location: 5492-5926 bp Feature: gene Location: 7077-7280 bp Ori: EMZ97130.1 Feature: domain Description: RVT_N Location: 7125-7263 bp Feature: domain Description: RVT_N Location: 7125 -7263 bp Feature: gene Location: 7262-8347 bp Ori: EMZ97131.1 Feature: domain Description: RVT_N Location: 7265-7361 bp Feature: domain Description: RVT_N Location: 7265 -7361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7412-8054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7412-805 4 bp Feature: domain Description: GIIM Note: maturase Location: 8105-8297 bp Feature: domain Description: GIIM Note: maturase Location: 8105 -8297 bp Feature: gene Location: 8313-8744 bp Ori: EMZ97132.1 Feature: domain Description: HNHc Note: nucleases Location: 8550-8709 bp Feature: domain Description: HNHc Note: nucleases Location: 85 5 0-8709 bp Feature: gene Location: 8722-9159 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)