myRT

myRT report for GCA_000356705.1_ASM35670v1

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Seq: AQFJ01000017.1 Escherichia coli BCE007_MS-11 gecBCE007MS11.contig.16, whole genome shotgun sequence (348655 bp)
Overview 1 RT 1: 157-3722 bp Neighborhood of RT #1 [157, 3739] PHA02517 RVT-GII GIIM PHA02517 PRK09413 Feature: gene Location: 157-297 bp Feature: gene Location: 449-841 bp Ori: ENA28735.1 Feature: domain Description: PHA02517 Location: 485-776 bp Feature: domain Description: PHA0251 7 Location: 485-776 bp Feature: gene Location: 1448-2956 bp Ori: ENA28736.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1706-2438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 706-2438 bp Feature: domain Description: GIIM Note: maturase Location: 2513-2711 bp Feature: domain Description: GIIM Note: maturase Location: 251 3-271 1 bp Feature: gene Location: 3133-3513 bp Ori: ENA28737.1 Feature: domain Description: PHA02517 Location: 3136-3505 bp Feature: domain Description: PHA0251 7 Location: 31 36-3505 bp Feature: gene Location: 3515-3739 bp Ori: ENA28738.1 Feature: domain Description: PRK09413 Location: 3530-3722 bp Feature: domain Description: PRK0941 3 Location: 3530-3722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed)

Seq: AQFJ01000037.1 Escherichia coli BCE007_MS-11 gecBCE007MS11.contig.36, whole genome shotgun sequence (25630 bp)
Overview 1 RT 1: 1090-4892 bp Neighborhood of RT #1 [1090, 4930] PRK09183 PRK09183 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1090-1449 bp Ori: ENA25445.1 Feature: domain Description: PRK09183 Location: 1096-1435 bp Feature: domain Description: PRK09183 Location: 1096-1435 bp Feature: gene Location: 1575-1868 bp Ori: ENA25446.1 Feature: domain Description: PRK09183 Location: 1578-1866 bp Feature: domain Description: PRK09183 Location: 1578-1866 bp Feature: gene Location: 2062-3570 bp Ori: ENA25447.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2320-3052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 32 0-3052 bp Feature: domain Description: GIIM Note: maturase Location: 3127-3325 bp Feature: domain Description: GIIM Note: maturase Location: 312 7-332 5 bp Feature: gene Location: 4177-4656 bp Ori: ENA25448.1 Feature: domain Description: PHA02517 Location: 4237-4591 bp Feature: domain Description: PHA02 517 Location: 42 37-4591 bp Feature: gene Location: 4763-4930 bp Ori: ENA25449.1 Feature: domain Description: InsE Location: 4784-4892 bp Feature: domain Description: InsE Location: 4784-4892 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: AQFJ01000033.1 Escherichia coli BCE007_MS-11 gecBCE007MS11.contig.32, whole genome shotgun sequence (40118 bp)
Overview 1 RT 1: 245-5116 bp Neighborhood of RT #1 [245, 5116] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 245-1372 bp Ori: ENA26141.1 Feature: domain Description: HTH_38 Location: 260-368 bp Feature: domain Description: HTH_3 8 Location: 260-3 68 bp Feature: domain Description: Tra8 Location: 404-1364 bp Feature: domain Description: Tra8 Location: 404-13 64 bp Feature: gene Location: 1689-1928 bp Ori: ENA26142.1 Feature: domain Description: PHA02517 Location: 1692-1863 bp Feature: domain Description: PHA02517 Location: 1692-1863 bp Feature: gene Location: 2535-4043 bp Ori: ENA26143.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2793-3525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2793 -3 525 bp Feature: domain Description: GIIM Note: maturase Location: 3600-3798 bp Feature: domain Description: GIIM Note: maturase Location: 3 600-3 798 bp Feature: gene Location: 4235-4606 bp Ori: ENA26144.1 Feature: domain Description: PHA02517 Location: 4238-4604 bp Feature: domain Description: PHA02517 Location: 423 8-4604 bp Feature: gene Location: 4949-5116 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AQFJ01000020.1 Escherichia coli BCE007_MS-11 gecBCE007MS11.contig.19, whole genome shotgun sequence (150023 bp)
Overview 1 RT 1: 104012-110007 bp Neighborhood of RT #1 [104012, 110009] PRK10739 PRK10472 RVT_N RVT-GII GIIM HNHc gntK PRK14987 Feature: gene Location: 104012-104605 bp Ori: ENA28162.1 Feature: domain Description: PRK10739 Location: 104015-104600 bp Feature: domain Description: PRK10739 Location: 104 015-104 600 bp Feature: gene Location: 104662-105783 bp Ori: ENA28163.1 Gene: gntU Feature: domain Description: PRK10472 Location: 104665-105778 bp Feature: domain Description: PRK104 72 Location: 104 665-105778 bp Feature: gene Location: 106420-108087 bp Ori: ENA28164.1 Feature: domain Description: RVT_N Location: 106468-106705 bp Feature: domain Description: RVT_N Location: 1064 68-106705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106756-107398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106756-107398 bp Feature: domain Description: GIIM Note: maturase Location: 107449-107683 bp Feature: domain Description: GIIM Note: maturase Location: 1074 4 9-107683 bp Feature: domain Description: HNHc Note: nucleases Location: 107893-108052 bp Feature: domain Description: HNHc Note: nucleases Location: 107893-108052 bp Feature: gene Location: 108348-108836 bp Ori: ENA28165.1 Gene: gntK Feature: domain Description: gntK Location: 108351-108831 bp Feature: domain Description: gntK Location: 108351-108831 bp Feature: gene Location: 109014-110009 bp Ori: ENA28166.1 Gene: gntR Feature: domain Description: PRK14987 Location: 109017-110007 bp Feature: domain Description: PRK14 987 Location: 109017-110007 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10739 (YhgN family NAAT transporter), PRK10472 (low affinity gluconate transporter; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), gntK (PRK11545), PRK14987 (HTH-type transcriptional regulator GntR)

Seq: AQFJ01000001.1 Escherichia coli BCE007_MS-11 gecBCE007MS11.contig.0, whole genome shotgun sequence (274844 bp)
Overview 1 RT 1: 1213-4688 bp Neighborhood of RT #1 [1213, 4693] DUF4094 Peptidase_S74 RVT-UG17 PRK10597 Feature: gene Location: 1213-1917 bp Ori: ENA36979.1 Feature: domain Description: DUF4094 Location: 1255-1345 bp Feature: domain Description: DUF4094 Location: 125 5 -1345 bp Feature: domain Description: Peptidase_S74 Location: 1561-1720 bp Feature: domain Description: Peptidase_S74 Location: 15 61-1720 bp Feature: gene Location: 1928-2215 bp Feature: gene Location: 2323-3693 bp Ori: ENA36981.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2551-3157 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 25 5 1-315 7 bp Feature: gene Location: 4181-4297 bp Feature: gene Location: 4445-4693 bp Ori: ENA36983.1 Feature: domain Description: PRK10597 Location: 4448-4688 bp Feature: domain Description: PRK105 97 Location: 4448-4688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4094 (pfam13334), Peptidase_S74 (pfam13884), RVT-UG17, PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: AQFJ01000028.1 Escherichia coli BCE007_MS-11 gecBCE007MS11.contig.27, whole genome shotgun sequence (166500 bp)
Overview 1 RT 1: 156996-166167 bp Neighborhood of RT #1 [156996, 166412] PRK09692 RVT-UG5 DDE_Tnp_IS1 ribokinase InsE PHA02517 RVT-GII GIIM Feature: gene Location: 156996-157124 bp Feature: gene Location: 157518-158774 bp Ori: ENA26737.1 Feature: domain Description: PRK09692 Location: 157527-158730 bp Feature: domain Description: PRK096 92 Location: 157527-158730 bp Feature: gene Location: 159006-160697 bp Ori: ENA26738.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 159342-159870 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 159342-159870 bp Feature: gene Location: 160920-161423 bp Ori: ENA26739.1 Feature: domain Description: DDE_Tnp_IS1 Location: 161031-161421 bp Feature: domain Description: DDE_Tnp_IS1 Location: 16 1031-16 1421 bp Feature: gene Location: 161434-161712 bp Ori: ENA26740.1 Feature: domain Description: ribokinase Location: 161443-161710 bp Feature: domain Description: ribokinase Location: 16 1443-16 1710 bp Feature: gene Location: 163493-163711 bp Ori: ENA26743.1 Feature: domain Description: InsE Location: 163496-163673 bp Feature: domain Description: InsE Location: 16 3496 -16 36 73 bp Feature: gene Location: 163818-164297 bp Ori: ENA26744.1 Feature: domain Description: PHA02517 Location: 163878-164232 bp Feature: domain Description: PHA02517 Location: 16 3878-16 4232 bp Feature: gene Location: 164904-166412 bp Ori: ENA26745.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165162-165894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 516 2-16 5894 bp Feature: domain Description: GIIM Note: maturase Location: 165969-166167 bp Feature: domain Description: GIIM Note: maturase Location: 16 596 9-16 6 16 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG5, DDE_Tnp_IS1 (pfam03400), ribokinase (PTZ00292), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AQFJ01000029.1 Escherichia coli BCE007_MS-11 gecBCE007MS11.contig.28, whole genome shotgun sequence (22497 bp)
Overview 1 RT 1: 18401-21659 bp Neighborhood of RT #1 [18401, 21904] COG4584 PRK09183 RVT-GII GIIM Feature: gene Location: 18401-19423 bp Ori: ENA26511.1 Feature: domain Description: COG4584 Location: 18404-19274 bp Feature: domain Description: COG4584 Location: 18404-1927 4 bp Feature: gene Location: 19423-20202 bp Ori: ENA26512.1 Feature: domain Description: PRK09183 Location: 19429-20200 bp Feature: domain Description: PRK09183 Location: 19429-20200 bp Feature: gene Location: 20396-21904 bp Ori: ENA26513.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20654-21386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20654-21386 bp Feature: domain Description: GIIM Note: maturase Location: 21461-21659 bp Feature: domain Description: GIIM Note: maturase Location: 21461-21659 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), RVT-GII, GIIM (pfam08388)

Seq: AQFJ01000035.1 Escherichia coli BCE007_MS-11 gecBCE007MS11.contig.34, whole genome shotgun sequence (18452 bp)
Overview 1 RT 1: 33-5030 bp Neighborhood of RT #1 [33, 5032] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 33-251 bp Ori: ENA26102.1 Feature: domain Description: InsE Location: 36-213 bp Feature: domain Description: InsE Location: 36-213 bp Feature: gene Location: 358-840 bp Ori: ENA26103.1 Feature: domain Description: PHA02517 Location: 418-766 bp Feature: domain Description: PHA02517 Location: 418 -766 bp Feature: gene Location: 1447-2955 bp Ori: ENA26104.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1705-2437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1705-2437 bp Feature: domain Description: GIIM Note: maturase Location: 2512-2710 bp Feature: domain Description: GIIM Note: maturase Location: 2512-2710 bp Feature: gene Location: 3607-3864 bp Feature: gene Location: 4421-5032 bp Ori: ENA26106.1 Feature: domain Description: fecE Location: 4424-5030 bp Feature: domain Description: fecE Location: 4424-5030 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), fecE (PRK11231)