myRT

myRT report for GCA_000356865.2_ASM35686v2

Download annotations/find similar RTs

Seq: APZI01000573.1 Escherichia coli p0305293.13 gecp030529313.contig.579, whole genome shotgun sequence (6352 bp)
Overview 1 RT 1: 76-3345 bp Neighborhood of RT #1 [76, 3345] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 76-231 bp Feature: gene Location: 375-2042 bp Feature: RT Description: RVT_N Location: 423-660 bp Feature: RT Description: RVT_N Location: 423-660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 711-1353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 1 -1 353 bp Feature: domain Description: GIIM Note: maturase Location: 1404-1638 bp Feature: domain Description: GIIM Note: maturase Location: 1 404-1 638 bp Feature: domain Description: HNHc Note: nucleases Location: 1848-2007 bp Feature: domain Description: HNHc Note: nucleases Location: 1 848-2007 bp Feature: gene Location: 2677-2925 bp Feature: gene Location: 3208-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: APZI01000490.1 Escherichia coli p0305293.13 gecp030529313.contig.496, whole genome shotgun sequence (4016 bp)
Overview 1 RT 1: 1-3637 bp Neighborhood of RT #1 [1, 3648] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1-265 bp Feature: gene Location: 309-659 bp Feature: domain Description: PHA02517 Location: 312-633 bp Feature: domain Description: PHA02 517 Location: 312 -633 bp Feature: gene Location: 782-2290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1040-1772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1040-1772 bp Feature: domain Description: GIIM Note: maturase Location: 1847-2045 bp Feature: domain Description: GIIM Note: maturase Location: 1847-2 045 bp Feature: gene Location: 2897-3316 bp Feature: domain Description: PHA02517 Location: 2912-3251 bp Feature: domain Description: PHA02 517 Location: 2 912 -32 51 bp Feature: gene Location: 3364-3648 bp Feature: domain Description: InsE Location: 3376-3637 bp Feature: domain Description: InsE Location: 3376-3637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, GIIM (pfam08388)

Seq: APZI01000665.1 Escherichia coli p0305293.13 gecp030529313.contig.672, whole genome shotgun sequence (2270 bp)
Overview 1 RT 1: 476-2270 bp Neighborhood of RT #1 [476, 2270] RVT-GII GIIM Feature: gene Location: 476-1807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761-1448 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 761-1448 bp Feature: domain Description: GIIM Note: maturase Location: 1565-1733 bp Feature: domain Description: GIIM Note: maturase Location: 1565-173 3 bp Feature: gene Location: 2167-2270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: APZI01000640.1 Escherichia coli p0305293.13 gecp030529313.contig.646, whole genome shotgun sequence (2546 bp)
Overview 1 RT 1: 1-2533 bp Neighborhood of RT #1 [1, 2546] DDE_Tnp_IS66 DDE_Tnp_IS66_C rve_3 RVT-GII Feature: gene Location: 1-234 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7-79 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7-79 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 103-211 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 103-211 bp Feature: gene Location: 266-553 bp Feature: domain Description: rve_3 Location: 314-395 bp Feature: domain Description: rve_3 Location: 314 -395 bp Feature: gene Location: 1561-2546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1846-2533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184 6-2533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, rve_3 (pfam13683)

Seq: APZI01000349.1 Escherichia coli p0305293.13 gecp030529313.contig.354, whole genome shotgun sequence (6638 bp)
Overview 1 RT 1: 3359-6625 bp Neighborhood of RT #1 [3359, 6638] Phage_integrase RVT-GII Feature: gene Location: 3359-4156 bp Feature: domain Description: Phage_integrase Location: 3491-4070 bp Feature: domain Description: Phage_integrase Location: 3491-4070 bp Feature: gene Location: 4153-4842 bp Feature: gene Location: 5653-6638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5938-6625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 938-6625 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-GII