myRT

myRT report for GCA_000356885.2_ASM35688v2

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Seq: APZM01000127.1 Escherichia coli BCE006_MS-23 gecBCE006MS23.contig.126, whole genome shotgun sequence (80247 bp)
Overview 1 RT 1: 76819-80246 bp Neighborhood of RT #1 [76819, 80247] PRK09692 RVT-UG5 InsA Feature: gene Location: 76819-78075 bp Ori: END52478.1 Feature: domain Description: PRK09692 Location: 76828-78031 bp Feature: domain Description: PRK09692 Location: 76828-78031 bp Feature: gene Location: 78168-78320 bp Feature: gene Location: 78307-79998 bp Ori: END52480.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 78643-79171 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 78643-791 71 bp Feature: gene Location: 80027-80247 bp Ori: END52481.1 Feature: domain Description: InsA Location: 80033-80246 bp Feature: domain Description: InsA Location: 80033-80246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), RVT-UG5, InsA (COG3677)

Seq: APZM01000106.1 Escherichia coli BCE006_MS-23 gecBCE006MS23.contig.105, whole genome shotgun sequence (154769 bp)
Overview 1 RT 1: 104875-110870 bp Neighborhood of RT #1 [104875, 110872] PRK10739 PRK10472 RVT-GII GIIM HNHc gntK PRK14987 Feature: gene Location: 104875-105468 bp Ori: END54643.1 Feature: domain Description: PRK10739 Location: 104878-105463 bp Feature: domain Description: PRK10739 Location: 104878-105463 bp Feature: gene Location: 105525-106646 bp Ori: END54644.1 Gene: gntU Feature: domain Description: PRK10472 Location: 105528-106641 bp Feature: domain Description: PRK10472 Location: 10552 8-106641 bp Feature: gene Location: 107676-108950 bp Ori: END54645.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107679-108261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107679-1082 61 bp Feature: domain Description: GIIM Note: maturase Location: 108312-108546 bp Feature: domain Description: GIIM Note: maturase Location: 108312 -108546 bp Feature: domain Description: HNHc Note: nucleases Location: 108756-108915 bp Feature: domain Description: HNHc Note: nucleases Location: 108756-108915 bp Feature: gene Location: 109211-109699 bp Ori: END54646.1 Gene: gntK Feature: domain Description: gntK Location: 109214-109694 bp Feature: domain Description: gntK Location: 1092 14-109694 bp Feature: gene Location: 109877-110872 bp Ori: END54647.1 Gene: gntR Feature: domain Description: PRK14987 Location: 109880-110870 bp Feature: domain Description: PRK14987 Location: 109880-110870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10739 (YhgN family NAAT transporter), PRK10472 (low affinity gluconate transporter; Provisional), RVT-GII, GIIM (pfam08388), HNHc (smart00507), gntK (PRK11545), PRK14987 (HTH-type transcriptional regulator GntR)

Seq: APZM01000148.1 Escherichia coli BCE006_MS-23 gecBCE006MS23.contig.147, whole genome shotgun sequence (10074 bp)
Overview 1 RT 1: 1104-4579 bp Neighborhood of RT #1 [1104, 4584] DUF4094 Peptidase_S74 RVT-UG17 PRK10597 Feature: gene Location: 1104-1808 bp Ori: END50693.1 Feature: domain Description: DUF4094 Location: 1146-1236 bp Feature: domain Description: DUF4094 Location: 1146-123 6 bp Feature: domain Description: Peptidase_S74 Location: 1452-1611 bp Feature: domain Description: Peptidase_S74 Location: 1452-1611 bp Feature: gene Location: 1819-2106 bp Feature: gene Location: 2214-3584 bp Ori: END50695.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2442-3048 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2442-3 048 bp Feature: gene Location: 4072-4188 bp Feature: gene Location: 4336-4584 bp Ori: END50697.1 Feature: domain Description: PRK10597 Location: 4339-4579 bp Feature: domain Description: PRK10597 Location: 43 3 9-4579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4094 (pfam13334), Peptidase_S74 (pfam13884), RVT-UG17, PRK10597 (DNA damage-inducible protein I; Provisional)

Seq: APZM01000090.1 Escherichia coli BCE006_MS-23 gecBCE006MS23.contig.89, whole genome shotgun sequence (799 bp)
Overview 1 RT 1: 1-649 bp Neighborhood of RT #1 [1, 649] RVT-GII Feature: gene Location: 1-649 bp Ori: END56159.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-64 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII