myRT

myRT report for GCA_000356905.1_ASM35690v1

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Seq: APZJ01000027.1 Escherichia coli 179100 gec179100.contig.26, whole genome shotgun sequence (55479 bp)
Overview 1 RT 1: 38080-42031 bp Neighborhood of RT #1 [38080, 42240] DinI RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 38080-38268 bp Feature: gene Location: 38279-38512 bp Feature: domain Description: DinI Location: 38321-38507 bp Feature: domain Description: DinI Location: 38321 -38507 bp Feature: gene Location: 38991-39926 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39093-39687 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39093-39687 bp Feature: gene Location: 39926-41560 bp Feature: domain Description: COG3950 Location: 40064-41522 bp Feature: domain Description: COG3950 Location: 40064-41 522 bp Feature: gene Location: 41680-42240 bp Feature: domain Description: TIGR02646 Location: 41683-42031 bp Feature: domain Description: TIGR02646 Location: 41 683-42031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DinI (pfam06183), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: APZJ01000097.1 Escherichia coli 179100 gec179100.contig.96, whole genome shotgun sequence (21766 bp)
Overview 1 RT 1: 9412-14385 bp Neighborhood of RT #1 [9412, 14387] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 9412-9714 bp Feature: domain Description: InsE Location: 9451-9700 bp Feature: domain Description: InsE Location: 9451-9700 bp Feature: gene Location: 9770-10195 bp Feature: domain Description: PHA02517 Location: 9794-10130 bp Feature: domain Description: PHA02 517 Location: 9794-10130 bp Feature: gene Location: 10802-12310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11060-11792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11060-11792 bp Feature: domain Description: GIIM Note: maturase Location: 11867-12065 bp Feature: domain Description: GIIM Note: maturase Location: 11867-12 065 bp Feature: gene Location: 13075-13218 bp Feature: gene Location: 13776-14387 bp Feature: domain Description: fecE Location: 13779-14385 bp Feature: domain Description: fecE Location: 13779-14385 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), fecE (PRK11231), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)