myRT

myRT report for GCA_000356925.2_ASM35692v2

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Seq: APZK01000215.1 Escherichia coli 2733950 gec2733950.contig.214, whole genome shotgun sequence (57718 bp)
Overview 1 RT 1: 5632-9376 bp Neighborhood of RT #1 [5632, 9558] DUF4094 Peptidase_S74 RVT-UG17 HTH_XRE Feature: gene Location: 5632-6321 bp Ori: END35972.1 Feature: domain Description: DUF4094 Location: 5674-5764 bp Feature: domain Description: DUF4094 Location: 5674-5764 bp Feature: domain Description: Peptidase_S74 Location: 5980-6139 bp Feature: domain Description: Peptidase_S74 Location: 5980-61 39 bp Feature: gene Location: 6347-6634 bp Feature: gene Location: 6813-8111 bp Ori: END35974.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 7041-7647 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 7041 -7647 bp Feature: gene Location: 8599-8715 bp Feature: gene Location: 9277-9558 bp Ori: END35976.1 Feature: domain Description: HTH_XRE Location: 9280-9376 bp Feature: domain Description: HTH_XRE Location: 9280-9376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4094 (pfam13334), Peptidase_S74 (pfam13884), RVT-UG17, HTH_XRE (smart00530)

Seq: APZK01000045.1 Escherichia coli 2733950 gec2733950.contig.44, whole genome shotgun sequence (4737 bp)
Overview 1 RT 1: 1-3972 bp Neighborhood of RT #1 [1, 3972] InsA PRK13889 RVT-Retrons Feature: gene Location: 1-146 bp Ori: END47820.1 Feature: domain Description: InsA Location: 4-145 bp Feature: domain Description: InsA Location: 4-145 bp Feature: gene Location: 713-2215 bp Ori: END47821.1 Feature: domain Description: PRK13889 Location: 716-1295 bp Feature: domain Description: PRK13889 Location: 716-12 95 bp Feature: gene Location: 2292-3392 bp Ori: END47822.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2433-2985 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 433-2 985 bp Feature: gene Location: 3757-3972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsA (COG3677), PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons