myRT

myRT report for GCA_000356985.2_ASM35698v2

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Seq: APYB01000038.1 Escherichia coli P0299438.11 gecP029943811.contig.37, whole genome shotgun sequence (447136 bp)
Overview 1 RT 1: 226052-235563 bp Neighborhood of RT #1 [226052, 236495] LprI RVT-UG7 FRG SR_Res_par HTH_38 RVT-Retrons DUF4236 Feature: gene Location: 226052-226882 bp Ori: ENB95137.1 Feature: domain Description: LprI Location: 226673-226868 bp Feature: domain Description: LprI Location: 226673-226868 bp Feature: gene Location: 227034-227219 bp Feature: gene Location: 227632-229146 bp Ori: ENB95139.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 228004-228427 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 228004-228427 bp Feature: gene Location: 229308-230132 bp Ori: ENB95140.1 Feature: domain Description: FRG Location: 229416-229710 bp Feature: domain Description: FRG Location: 22941 6-22971 0 bp Feature: gene Location: 230452-231063 bp Ori: ENB95141.1 Feature: domain Description: SR_Res_par Location: 230467-230899 bp Feature: domain Description: SR_Res_par Location: 230467-230899 bp Feature: domain Description: HTH_38 Location: 230962-231055 bp Feature: domain Description: HTH_38 Location: 230962-231 055 bp Feature: gene Location: 231592-232989 bp Feature: gene Location: 233086-234036 bp Ori: ENB95143.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 233266-233797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 233266-233797 bp Feature: gene Location: 234360-234515 bp Feature: gene Location: 235404-236495 bp Ori: ENB95145.1 Feature: domain Description: DUF4236 Location: 235419-235563 bp Feature: domain Description: DUF4236 Location: 23541 9-235563 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LprI (pfam07007), RVT-UG7, FRG (smart00901), SR_Res_par (cd03767), HTH_38 (pfam13936), RVT-Retrons, DUF4236 (pfam14020)

Seq: APYB01000087.1 Escherichia coli P0299438.11 gecP029943811.contig.88, whole genome shotgun sequence (3067 bp)
Overview 1 RT 1: 125-3065 bp Neighborhood of RT #1 [125, 3067] RVT-GII Intron_maturas2 HNHc DUF932 Antirestrict Feature: gene Location: 125-1903 bp Ori: ENB91571.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386-1181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386-1181 bp Feature: domain Description: Intron_maturas2 Location: 1307-1532 bp Feature: domain Description: Intron_maturas2 Location: 1307-1532 bp Feature: domain Description: HNHc Note: nucleases Location: 1727-1877 bp Feature: domain Description: HNHc Note: nucleases Location: 172 7-1877 bp Feature: gene Location: 2106-2462 bp Ori: ENB91572.1 Feature: domain Description: DUF932 Location: 2112-2427 bp Feature: domain Description: DUF932 Location: 2 112 -2 42 7 bp Feature: gene Location: 2804-3067 bp Ori: ENB91573.1 Feature: domain Description: Antirestrict Location: 2990-3065 bp Feature: domain Description: Antirestrict Location: 2 990-3065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF932 (pfam06067), Antirestrict (pfam03230)

Seq: APYB01000065.1 Escherichia coli P0299438.11 gecP029943811.contig.65, whole genome shotgun sequence (118297 bp)
Overview 1 RT 1: 125-2963 bp Neighborhood of RT #1 [125, 2965] RVT-GII Intron_maturas2 HNHc DUF932 RadC Feature: gene Location: 125-1903 bp Ori: ENB92431.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386-1181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 86-1181 bp Feature: domain Description: Intron_maturas2 Location: 1307-1532 bp Feature: domain Description: Intron_maturas2 Location: 13 07-153 2 bp Feature: domain Description: HNHc Note: nucleases Location: 1727-1877 bp Feature: domain Description: HNHc Note: nucleases Location: 1727-1877 bp Feature: gene Location: 2076-2462 bp Ori: ENB92432.1 Feature: domain Description: DUF932 Location: 2082-2427 bp Feature: domain Description: DUF93 2 Location: 2082-2427 bp Feature: gene Location: 2492-2965 bp Ori: ENB92433.1 Feature: domain Description: RadC Location: 2528-2963 bp Feature: domain Description: RadC Location: 2528-2963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF932 (pfam06067), RadC (pfam04002)

Seq: APYB01000007.1 Escherichia coli P0299438.11 gecP029943811.contig.6, whole genome shotgun sequence (96501 bp)
Overview 1 RT 1: 125-2985 bp Neighborhood of RT #1 [125, 2987] RVT-GII Intron_maturas2 HNHc DUF932 Antirestrict Feature: gene Location: 125-1903 bp Ori: ENC00296.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386-1181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386-1181 bp Feature: domain Description: Intron_maturas2 Location: 1307-1532 bp Feature: domain Description: Intron_maturas2 Location: 1307-1532 bp Feature: domain Description: HNHc Note: nucleases Location: 1727-1877 bp Feature: domain Description: HNHc Note: nucleases Location: 1727-1877 bp Feature: gene Location: 2148-2462 bp Ori: ENC00297.1 Feature: domain Description: DUF932 Location: 2181-2427 bp Feature: domain Description: DUF932 Location: 2181-24 27 bp Feature: gene Location: 2523-2987 bp Ori: ENC00298.1 Feature: domain Description: Antirestrict Location: 2715-2985 bp Feature: domain Description: Antirestrict Location: 2715-2985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF932 (pfam06067), Antirestrict (pfam03230)

Seq: APYB01000033.1 Escherichia coli P0299438.11 gecP029943811.contig.32, whole genome shotgun sequence (11311 bp)
Overview 1 RT 1: 9-3591 bp Neighborhood of RT #1 [9, 3743] Tra5 RVT-GII StbA Plasmid_stab_B Feature: gene Location: 9-374 bp Ori: ENB96322.1 Feature: domain Description: Tra5 Location: 12-369 bp Feature: domain Description: Tra5 Location: 12-369 bp Feature: gene Location: 860-1093 bp Ori: ENB96323.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-1052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 863-105 2 bp Feature: gene Location: 2389-3348 bp Ori: ENB96324.1 Feature: domain Description: StbA Location: 2395-3343 bp Feature: domain Description: StbA Location: 2395 -3343 bp Feature: gene Location: 3348-3743 bp Ori: ENB96325.1 Feature: domain Description: Plasmid_stab_B Location: 3378-3591 bp Feature: domain Description: Plasmid_stab_B Location: 3378-35 91 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)