myRT

myRT report for GCA_000357045.2_ASM35704v2

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Seq: APYE01000023.1 Escherichia coli P0299438.5 gecP02994385.contig.23, whole genome shotgun sequence (11441 bp)
Overview 1 RT 1: 7762-11341 bp Neighborhood of RT #1 [7762, 11346] Plasmid_stab_B StbA RVT-GII rve_2 Feature: gene Location: 7762-8157 bp Ori: ENC13828.1 Feature: domain Description: Plasmid_stab_B Location: 7792-8005 bp Feature: domain Description: Plasmid_stab_B Location: 7792-8005 bp Feature: gene Location: 8157-9116 bp Ori: ENC13829.1 Feature: domain Description: StbA Location: 8163-9111 bp Feature: domain Description: StbA Location: 81 63-91 1 1 bp Feature: gene Location: 10412-10645 bp Ori: ENC13830.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10415-10604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 041 5-1 0604 bp Feature: gene Location: 11131-11346 bp Ori: ENC13831.1 Feature: domain Description: rve_2 Location: 11173-11341 bp Feature: domain Description: rve_2 Location: 1 1 1 73-1 1 341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, rve_2 (pfam13333)

Seq: APYE01000069.1 Escherichia coli P0299438.5 gecP02994385.contig.69, whole genome shotgun sequence (117753 bp)
Overview 1 RT 1: 1-2494 bp Neighborhood of RT #1 [1, 2496] RVT-GII Intron_maturas2 HNHc DUF932 RadC Feature: gene Location: 1-1434 bp Ori: ENC07069.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-712 bp Feature: domain Description: Intron_maturas2 Location: 838-1063 bp Feature: domain Description: Intron_maturas2 Location: 838-1063 bp Feature: domain Description: HNHc Note: nucleases Location: 1258-1408 bp Feature: domain Description: HNHc Note: nucleases Location: 12 58-1408 bp Feature: gene Location: 1604-1993 bp Ori: ENC07070.1 Feature: domain Description: DUF932 Location: 1610-1958 bp Feature: domain Description: DUF932 Location: 1610-1958 bp Feature: gene Location: 2023-2496 bp Ori: ENC07071.1 Feature: domain Description: RadC Location: 2059-2494 bp Feature: domain Description: RadC Location: 2 059-2 494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF932 (pfam06067), RadC (pfam04002)

Seq: APYE01000037.1 Escherichia coli P0299438.5 gecP02994385.contig.37, whole genome shotgun sequence (419528 bp)
Overview 1 RT 1: 198288-207826 bp Neighborhood of RT #1 [198288, 208758] LprI RVT-UG7 FRG SR_Res_par HTH_38 RVT-Retrons DUF4236 Feature: gene Location: 198288-199145 bp Ori: ENC10990.1 Feature: domain Description: LprI Location: 198936-199131 bp Feature: domain Description: LprI Location: 19893 6-19913 1 bp Feature: gene Location: 199357-199482 bp Feature: gene Location: 199895-201409 bp Ori: ENC10992.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 200267-200690 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 200267-200690 bp Feature: gene Location: 201571-202395 bp Ori: ENC10993.1 Feature: domain Description: FRG Location: 201679-201973 bp Feature: domain Description: FRG Location: 201679-201973 bp Feature: gene Location: 202715-203326 bp Ori: ENC10994.1 Feature: domain Description: SR_Res_par Location: 202730-203162 bp Feature: domain Description: SR_Res_par Location: 20273 0-203 162 bp Feature: domain Description: HTH_38 Location: 203225-203318 bp Feature: domain Description: HTH_3 8 Location: 203 225-203 3 18 bp Feature: gene Location: 203855-205252 bp Feature: gene Location: 205349-206299 bp Ori: ENC10996.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 205529-206060 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 205529-206060 bp Feature: gene Location: 206623-206778 bp Feature: gene Location: 207667-208758 bp Ori: ENC10998.1 Feature: domain Description: DUF4236 Location: 207682-207826 bp Feature: domain Description: DUF423 6 Location: 207682-207826 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LprI (pfam07007), RVT-UG7, FRG (smart00901), SR_Res_par (cd03767), HTH_38 (pfam13936), RVT-Retrons, DUF4236 (pfam14020)

Seq: APYE01000008.1 Escherichia coli P0299438.5 gecP02994385.contig.7, whole genome shotgun sequence (96102 bp)
Overview 1 RT 1: 1-2516 bp Neighborhood of RT #1 [1, 2518] RVT-GII Intron_maturas2 HNHc DUF932 Antirestrict Feature: gene Location: 1-1434 bp Ori: ENC16629.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 -712 bp Feature: domain Description: Intron_maturas2 Location: 838-1063 bp Feature: domain Description: Intron_maturas2 Location: 838-1063 bp Feature: domain Description: HNHc Note: nucleases Location: 1258-1408 bp Feature: domain Description: HNHc Note: nucleases Location: 1258-14 08 bp Feature: gene Location: 1679-1993 bp Ori: ENC16630.1 Feature: domain Description: DUF932 Location: 1712-1958 bp Feature: domain Description: DUF932 Location: 1712-1958 bp Feature: gene Location: 2054-2518 bp Ori: ENC16631.1 Feature: domain Description: Antirestrict Location: 2246-2516 bp Feature: domain Description: Antirestrict Location: 224 6-2516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF932 (pfam06067), Antirestrict (pfam03230)