myRT

myRT report for GCA_000357225.2_ASM35722v2

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Seq: APYF01000025.1 Escherichia coli P0299438.6 gecP02994386.contig.25, whole genome shotgun sequence (11808 bp)
Overview 1 RT 1: 7822-11808 bp Neighborhood of RT #1 [7822, 11808] Plasmid_stab_B StbA RVT-GII Feature: gene Location: 7822-8217 bp Ori: ENC19190.1 Feature: domain Description: Plasmid_stab_B Location: 7852-8065 bp Feature: domain Description: Plasmid_stab_B Location: 7852-8065 bp Feature: gene Location: 8217-9176 bp Ori: ENC19191.1 Feature: domain Description: StbA Location: 8223-9171 bp Feature: domain Description: StbA Location: 8223-91 71 bp Feature: gene Location: 10472-10705 bp Ori: ENC19197.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10475-10664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0475-1 0664 bp Feature: gene Location: 11315-11808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII

Seq: APYF01000055.1 Escherichia coli P0299438.6 gecP02994386.contig.55, whole genome shotgun sequence (2480 bp)
Overview 1 RT 1: 1-1967 bp Neighborhood of RT #1 [1, 1967] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 1-1410 bp Ori: ENC13814.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-688 bp Feature: domain Description: Intron_maturas2 Location: 814-1039 bp Feature: domain Description: Intron_maturas2 Location: 814-1039 bp Feature: domain Description: HNHc Note: nucleases Location: 1234-1384 bp Feature: domain Description: HNHc Note: nucleases Location: 12 34-1384 bp Feature: gene Location: 1583-1711 bp Feature: gene Location: 1827-1967 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: APYF01000040.1 Escherichia coli P0299438.6 gecP02994386.contig.40, whole genome shotgun sequence (445499 bp)
Overview 1 RT 1: 225432-234943 bp Neighborhood of RT #1 [225432, 235875] LprI RVT-UG7 FRG SR_Res_par HTH_38 RVT-Retrons DUF4236 Feature: gene Location: 225432-226262 bp Ori: ENC15975.1 Feature: domain Description: LprI Location: 226053-226248 bp Feature: domain Description: LprI Location: 226053 -226248 bp Feature: gene Location: 226414-226599 bp Feature: gene Location: 227012-228526 bp Ori: ENC16002.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 227384-227807 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2273 84-227807 bp Feature: gene Location: 228688-229512 bp Ori: ENC16003.1 Feature: domain Description: FRG Location: 228796-229090 bp Feature: domain Description: FRG Location: 228796-229090 bp Feature: gene Location: 229832-230443 bp Ori: ENC16132.1 Feature: domain Description: SR_Res_par Location: 229847-230279 bp Feature: domain Description: SR_Res_par Location: 229847-23 0279 bp Feature: domain Description: HTH_38 Location: 230342-230435 bp Feature: domain Description: HTH_3 8 Location: 23 03 42-23 043 5 bp Feature: gene Location: 230972-232369 bp Feature: gene Location: 232466-233416 bp Ori: ENC15988.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 232646-233177 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23 2646-23 3 177 bp Feature: gene Location: 233740-233895 bp Feature: gene Location: 234784-235875 bp Ori: ENC16236.1 Feature: domain Description: DUF4236 Location: 234799-234943 bp Feature: domain Description: DUF423 6 Location: 23 4799-23 4943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LprI (pfam07007), RVT-UG7, FRG (smart00901), SR_Res_par (cd03767), HTH_38 (pfam13936), RVT-Retrons, DUF4236 (pfam14020)

Seq: APYF01000009.1 Escherichia coli P0299438.6 gecP02994386.contig.9, whole genome shotgun sequence (96063 bp)
Overview 1 RT 1: 1-2492 bp Neighborhood of RT #1 [1, 2494] RVT-GII Intron_maturas2 HNHc DUF932 Antirestrict Feature: gene Location: 1-1410 bp Ori: ENC21696.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-688 bp Feature: domain Description: Intron_maturas2 Location: 814-1039 bp Feature: domain Description: Intron_maturas2 Location: 814 -1039 bp Feature: domain Description: HNHc Note: nucleases Location: 1234-1384 bp Feature: domain Description: HNHc Note: nucleases Location: 1234 -1384 bp Feature: gene Location: 1655-1969 bp Ori: ENC21686.1 Feature: domain Description: DUF932 Location: 1688-1934 bp Feature: domain Description: DUF932 Location: 1688-1934 bp Feature: gene Location: 2030-2494 bp Ori: ENC21658.1 Feature: domain Description: Antirestrict Location: 2222-2492 bp Feature: domain Description: Antirestrict Location: 2222-24 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF932 (pfam06067), Antirestrict (pfam03230)

Seq: APYF01000068.1 Escherichia coli P0299438.6 gecP02994386.contig.68, whole genome shotgun sequence (117637 bp)
Overview 1 RT 1: 1-2470 bp Neighborhood of RT #1 [1, 2472] RVT-GII Intron_maturas2 HNHc DUF932 RadC Feature: gene Location: 1-1410 bp Ori: ENC11379.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7-688 bp Feature: domain Description: Intron_maturas2 Location: 814-1039 bp Feature: domain Description: Intron_maturas2 Location: 814-1039 bp Feature: domain Description: HNHc Note: nucleases Location: 1234-1384 bp Feature: domain Description: HNHc Note: nucleases Location: 1234-1384 bp Feature: gene Location: 1583-1969 bp Ori: ENC11388.1 Feature: domain Description: DUF932 Location: 1589-1934 bp Feature: domain Description: DUF932 Location: 15 89-1934 bp Feature: gene Location: 1999-2472 bp Ori: ENC11418.1 Feature: domain Description: RadC Location: 2035-2470 bp Feature: domain Description: RadC Location: 2035 -2470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF932 (pfam06067), RadC (pfam04002)