myRT

myRT report for GCA_000357245.1_ASM35724v1

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Seq: APYG01000115.1 Escherichia coli P0299438.7 gecP02994387.contig.115, whole genome shotgun sequence (9139 bp)
Overview 1 RT 1: 109-3541 bp Neighborhood of RT #1 [109, 3693] rve_2 RVT-GII StbA Plasmid_stab_B Feature: gene Location: 109-324 bp Ori: ENC10196.1 Feature: domain Description: rve_2 Location: 151-319 bp Feature: domain Description: rve_2 Location: 1 51 -31 9 bp Feature: gene Location: 810-1043 bp Ori: ENC10197.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 813-1002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 3-1 002 bp Feature: gene Location: 2339-3298 bp Ori: ENC10198.1 Feature: domain Description: StbA Location: 2345-3293 bp Feature: domain Description: StbA Location: 2345-3293 bp Feature: gene Location: 3298-3693 bp Ori: ENC10199.1 Feature: domain Description: Plasmid_stab_B Location: 3328-3541 bp Feature: domain Description: Plasmid_stab_B Location: 3328-3541 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rve_2 (pfam13333), RVT-GII, StbA (pfam06406), Plasmid_stab_B (pfam10784)

Seq: APYG01000073.1 Escherichia coli P0299438.7 gecP02994387.contig.73, whole genome shotgun sequence (464747 bp)
Overview 1 RT 1: 244340-253851 bp Neighborhood of RT #1 [244340, 254783] LprI RVT-UG7 FRG SR_Res_par HTH_38 RVT-Retrons DUF4236 Feature: gene Location: 244340-245170 bp Ori: ENC18355.1 Feature: domain Description: LprI Location: 244961-245156 bp Feature: domain Description: LprI Location: 2 44961-2 45156 bp Feature: gene Location: 245382-245507 bp Feature: gene Location: 245920-247434 bp Ori: ENC18357.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 246292-246715 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2 462 92 -2 46715 bp Feature: gene Location: 247596-248420 bp Ori: ENC18358.1 Feature: domain Description: FRG Location: 247704-247998 bp Feature: domain Description: FRG Location: 2 47704-2 47998 bp Feature: gene Location: 248740-249351 bp Ori: ENC18359.1 Feature: domain Description: SR_Res_par Location: 248755-249187 bp Feature: domain Description: SR_Res_par Location: 2 48755-2 49187 bp Feature: domain Description: HTH_38 Location: 249250-249343 bp Feature: domain Description: HTH_38 Location: 2 492 50-2 49343 bp Feature: gene Location: 249880-251277 bp Feature: gene Location: 251374-252324 bp Ori: ENC18361.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 251554-252085 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 51554-2 52 085 bp Feature: gene Location: 252648-252803 bp Feature: gene Location: 253692-254783 bp Ori: ENC18363.1 Feature: domain Description: DUF4236 Location: 253707-253851 bp Feature: domain Description: DUF42 36 Location: 2 53707-2 53851 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LprI (pfam07007), RVT-UG7, FRG (smart00901), SR_Res_par (cd03767), HTH_38 (pfam13936), RVT-Retrons, DUF4236 (pfam14020)