myRT

myRT report for GCA_000357265.2_ASM35726v2

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Seq: APYH01000004.1 Escherichia coli P0299438.8 gecP02994388.contig.3, whole genome shotgun sequence (8970 bp)
Overview 1 RT 1: 5279-8858 bp Neighborhood of RT #1 [5279, 8863] Plasmid_stab_B StbA RVT-GII rve_2 Feature: gene Location: 5279-5674 bp Ori: ENC33175.1 Feature: domain Description: Plasmid_stab_B Location: 5309-5522 bp Feature: domain Description: Plasmid_stab_B Location: 5309-5522 bp Feature: gene Location: 5674-6633 bp Ori: ENC33176.1 Feature: domain Description: StbA Location: 5680-6628 bp Feature: domain Description: StbA Location: 5680-6628 bp Feature: gene Location: 7929-8162 bp Ori: ENC33177.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7932-8121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7932-81 21 bp Feature: gene Location: 8648-8863 bp Ori: ENC33178.1 Feature: domain Description: rve_2 Location: 8690-8858 bp Feature: domain Description: rve_2 Location: 8690-8858 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Plasmid_stab_B (pfam10784), StbA (pfam06406), RVT-GII, rve_2 (pfam13333)

Seq: APYH01000079.1 Escherichia coli P0299438.8 gecP02994388.contig.80, whole genome shotgun sequence (419375 bp)
Overview 1 RT 1: 197256-206767 bp Neighborhood of RT #1 [197256, 207699] LprI RVT-UG7 FRG SR_Res_par HTH_38 RVT-Retrons DUF4236 Feature: gene Location: 197256-198086 bp Ori: ENC24762.1 Feature: domain Description: LprI Location: 197877-198072 bp Feature: domain Description: LprI Location: 197877-198072 bp Feature: gene Location: 198238-198423 bp Feature: gene Location: 198836-200350 bp Ori: ENC24764.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 199208-199631 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 1992 08-199631 bp Feature: gene Location: 200512-201336 bp Ori: ENC24765.1 Feature: domain Description: FRG Location: 200620-200914 bp Feature: domain Description: FRG Location: 2 0062 0-2 00914 bp Feature: gene Location: 201656-202267 bp Ori: ENC24766.1 Feature: domain Description: SR_Res_par Location: 201671-202103 bp Feature: domain Description: SR_Res_par Location: 2 01671-2 02 103 bp Feature: domain Description: HTH_38 Location: 202166-202259 bp Feature: domain Description: HTH_38 Location: 2 02 166-2 02 2 59 bp Feature: gene Location: 202796-204193 bp Feature: gene Location: 204290-205240 bp Ori: ENC24768.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 204470-205001 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 04470-2 05001 bp Feature: gene Location: 205564-205719 bp Feature: gene Location: 206608-207699 bp Ori: ENC24770.1 Feature: domain Description: DUF4236 Location: 206623-206767 bp Feature: domain Description: DUF42 36 Location: 2 0662 3-2 06767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LprI (pfam07007), RVT-UG7, FRG (smart00901), SR_Res_par (cd03767), HTH_38 (pfam13936), RVT-Retrons, DUF4236 (pfam14020)