myRT

myRT report for GCA_000357845.2_ASM35784v2

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Seq: AQBD01000056.1 Escherichia coli P0304816.6 gecP03048166.contig.55, whole genome shotgun sequence (4263 bp)
Overview 1 RT 1: 1-3500 bp Neighborhood of RT #1 [1, 3571] PRK13699 RVT_N RVT-GII GIIM HNHc DUF1281 DUF1281_C Feature: gene Location: 1-293 bp Ori: ENF58129.1 Feature: domain Description: PRK13699 Location: 25-292 bp Feature: domain Description: PRK1 3699 Location: 25-292 bp Feature: gene Location: 937-2595 bp Ori: ENF58130.1 Feature: domain Description: RVT_N Location: 949-1192 bp Feature: domain Description: RVT_N Location: 949-1 1 92 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1237-1873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 237-1 873 bp Feature: domain Description: GIIM Note: maturase Location: 1924-2158 bp Feature: domain Description: GIIM Note: maturase Location: 1 924-21 58 bp Feature: domain Description: HNHc Note: nucleases Location: 2389-2539 bp Feature: domain Description: HNHc Note: nucleases Location: 2389-2539 bp Feature: gene Location: 2856-2981 bp Feature: gene Location: 3134-3571 bp Ori: ENF58132.1 Feature: domain Description: DUF1281 Location: 3137-3266 bp Feature: domain Description: DUF1 281 Location: 31 37-3266 bp Feature: domain Description: DUF1281_C Location: 3272-3500 bp Feature: domain Description: DUF1 281 _C Location: 3272-3500 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13699 (putative methylase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: AQBD01000053.1 Escherichia coli P0304816.6 gecP03048166.contig.52, whole genome shotgun sequence (8126 bp)
Overview 1 RT 1: 5230-7299 bp Neighborhood of RT #1 [5230, 7373] Ogr_Delta D RVT-GII GIIM Feature: gene Location: 5230-5490 bp Ori: ENF58172.1 Feature: domain Description: Ogr_Delta Location: 5239-5380 bp Feature: domain Description: Ogr_Delta Location: 52 39-5380 bp Feature: gene Location: 5533-5904 bp Ori: ENF58173.1 Feature: domain Description: D Location: 5563-5878 bp Feature: domain Description: D Location: 5563-5878 bp Feature: gene Location: 6042-7373 bp Ori: ENF58174.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6327-7014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 632 7-7014 bp Feature: domain Description: GIIM Note: maturase Location: 7131-7299 bp Feature: domain Description: GIIM Note: maturase Location: 7131-72 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), D (PHA02561), RVT-GII, GIIM (pfam08388)

Seq: AQBD01000094.1 Escherichia coli P0304816.6 gecP03048166.contig.93, whole genome shotgun sequence (85777 bp)
Overview 1 RT 1: 42608-52807 bp Neighborhood of RT #1 [42608, 52807] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Feature: gene Location: 42608-42880 bp Feature: gene Location: 43333-44103 bp Feature: gene Location: 44165-45874 bp Ori: ENF56989.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44318-44915 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 443 18-44915 bp Feature: gene Location: 46011-46508 bp Feature: gene Location: 46793-47209 bp Ori: ENF56991.1 Feature: domain Description: HTH_XRE Location: 46796-46946 bp Feature: domain Description: HTH_XRE Location: 46796-46946 bp Feature: gene Location: 47240-48421 bp Ori: ENF56992.1 Feature: domain Description: DUF4062 Location: 47255-47582 bp Feature: domain Description: DUF4062 Location: 47255-47582 bp Feature: gene Location: 49130-50314 bp Ori: ENF56993.1 Feature: domain Description: PRK09692 Location: 49136-50291 bp Feature: domain Description: PRK09692 Location: 4913 6-50291 bp Feature: gene Location: 50307-51935 bp Ori: ENF56994.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50715-51144 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50715-51144 bp Feature: gene Location: 51932-52672 bp Feature: gene Location: 52688-52807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7

Seq: AQBD01000046.1 Escherichia coli P0304816.6 gecP03048166.contig.45, whole genome shotgun sequence (5888 bp)
Overview 1 RT 1: 64-2997 bp Neighborhood of RT #1 [64, 2999] RVT_N RVT-GII GIIM HNHc PRK13699 PRK13699 Feature: gene Location: 64-1722 bp Ori: ENF58292.1 Feature: domain Description: RVT_N Location: 76-319 bp Feature: domain Description: RVT_N Location: 76-319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364-1000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 364 -1000 bp Feature: domain Description: GIIM Note: maturase Location: 1051-1285 bp Feature: domain Description: GIIM Note: maturase Location: 1051-1285 bp Feature: domain Description: HNHc Note: nucleases Location: 1516-1666 bp Feature: domain Description: HNHc Note: nucleases Location: 1516-1666 bp Feature: gene Location: 2366-2788 bp Ori: ENF58293.1 Feature: domain Description: PRK13699 Location: 2390-2750 bp Feature: domain Description: PRK13699 Location: 2390-2750 bp Feature: gene Location: 2814-2999 bp Ori: ENF58294.1 Feature: domain Description: PRK13699 Location: 2817-2997 bp Feature: domain Description: PRK13699 Location: 2817-2997 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK13699 (putative methylase; Provisional)

Seq: AQBD01000042.1 Escherichia coli P0304816.6 gecP03048166.contig.41, whole genome shotgun sequence (3783 bp)
Overview 1 RT 1: 1-3753 bp Neighborhood of RT #1 [1, 3753] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-187 bp Feature: gene Location: 501-2168 bp Ori: ENF58383.1 Feature: domain Description: RVT_N Location: 549-786 bp Feature: domain Description: RVT_N Location: 5 49-786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 837-1479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 837-1479 bp Feature: domain Description: GIIM Note: maturase Location: 1530-1764 bp Feature: domain Description: GIIM Note: maturase Location: 15 30-1764 bp Feature: domain Description: HNHc Note: nucleases Location: 1974-2133 bp Feature: domain Description: HNHc Note: nucleases Location: 1974-2133 bp Feature: gene Location: 2803-2967 bp Feature: gene Location: 3319-3753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)