myRT

myRT report for GCA_000357865.2_ASM35786v2

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Seq: AQBE01000004.1 Escherichia coli P0304816.7 gecP03048167.contig.3, whole genome shotgun sequence (86278 bp)
Overview 1 RT 1: 43144-53343 bp Neighborhood of RT #1 [43144, 53343] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Feature: gene Location: 43144-43416 bp Feature: gene Location: 43869-44639 bp Feature: gene Location: 44701-46410 bp Ori: ENF64878.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44854-45451 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44854-45451 bp Feature: gene Location: 46547-47044 bp Feature: gene Location: 47284-47745 bp Ori: ENF64880.1 Gene: ahdIC Feature: domain Description: HTH_XRE Location: 47314-47482 bp Feature: domain Description: HTH_XRE Location: 4731 4-47482 bp Feature: gene Location: 47776-48957 bp Ori: ENF64881.1 Feature: domain Description: DUF4062 Location: 47791-48118 bp Feature: domain Description: DUF4062 Location: 47791 -481 1 8 bp Feature: gene Location: 49666-50850 bp Ori: ENF64882.1 Feature: domain Description: PRK09692 Location: 49672-50827 bp Feature: domain Description: PRK09692 Location: 49672-50827 bp Feature: gene Location: 50843-52471 bp Ori: ENF64883.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51251-51680 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51 251 -51 680 bp Feature: gene Location: 52468-53208 bp Feature: gene Location: 53224-53343 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7

Seq: AQBE01000109.1 Escherichia coli P0304816.7 gecP03048167.contig.108, whole genome shotgun sequence (15351 bp)
Overview 1 RT 1: 6136-9398 bp Neighborhood of RT #1 [6136, 9508] RVT-GII GIIM D Ogr_Delta Feature: gene Location: 6136-6483 bp Feature: gene Location: 6501-6659 bp Feature: gene Location: 7365-8696 bp Ori: ENF58329.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7650-8337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7650-8337 bp Feature: domain Description: GIIM Note: maturase Location: 8454-8622 bp Feature: domain Description: GIIM Note: maturase Location: 8454-862 2 bp Feature: gene Location: 8834-9205 bp Ori: ENF58330.1 Feature: domain Description: D Location: 8864-9179 bp Feature: domain Description: D Location: 8864-9179 bp Feature: gene Location: 9248-9508 bp Ori: ENF58331.1 Feature: domain Description: Ogr_Delta Location: 9257-9398 bp Feature: domain Description: Ogr_Delta Location: 92 57-9398 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), D (PHA02561), Ogr_Delta (pfam04606)

Seq: AQBE01000170.1 Escherichia coli P0304816.7 gecP03048167.contig.170, whole genome shotgun sequence (2351 bp)
Overview 1 RT 1: 1-2351 bp Neighborhood of RT #1 [1, 2351] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-1651 bp Ori: ENF56477.1 Feature: domain Description: RVT_N Location: 49-286 bp Feature: domain Description: RVT_N Location: 49-286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 337-979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 7-979 bp Feature: domain Description: GIIM Note: maturase Location: 1030-1264 bp Feature: domain Description: GIIM Note: maturase Location: 103 0-1264 bp Feature: domain Description: HNHc Note: nucleases Location: 1474-1633 bp Feature: domain Description: HNHc Note: nucleases Location: 1474-163 3 bp Feature: gene Location: 2225-2351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)