myRT

myRT report for GCA_000357885.2_ASM35788v2

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Seq: AQBF01000161.1 Escherichia coli P0304816.8 gecP03048168.contig.161, whole genome shotgun sequence (2011 bp)
Overview 1 RT 1: 1-1976 bp Neighborhood of RT #1 [1, 2011] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-189 bp Feature: gene Location: 260-394 bp Feature: gene Location: 467-2011 bp Ori: ENF59538.1 Feature: domain Description: RVT_N Location: 473-629 bp Feature: domain Description: RVT_N Location: 473-629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 680-1322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 680-1 322 bp Feature: domain Description: GIIM Note: maturase Location: 1373-1607 bp Feature: domain Description: GIIM Note: maturase Location: 1 373-1 607 bp Feature: domain Description: HNHc Note: nucleases Location: 1817-1976 bp Feature: domain Description: HNHc Note: nucleases Location: 1 81 7-1 976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQBF01000003.1 Escherichia coli P0304816.8 gecP03048168.contig.2, whole genome shotgun sequence (98196 bp)
Overview 1 RT 1: 43709-53908 bp Neighborhood of RT #1 [43709, 53908] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Feature: gene Location: 43709-43981 bp Feature: gene Location: 44434-45204 bp Feature: gene Location: 45266-46975 bp Ori: ENF74735.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45419-46016 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45419-46016 bp Feature: gene Location: 47112-47609 bp Feature: gene Location: 47894-48310 bp Ori: ENF74737.1 Feature: domain Description: HTH_XRE Location: 47897-48047 bp Feature: domain Description: HTH_XRE Location: 47897-48047 bp Feature: gene Location: 48341-49522 bp Ori: ENF74738.1 Feature: domain Description: DUF4062 Location: 48356-48683 bp Feature: domain Description: DUF4062 Location: 48356-48683 bp Feature: gene Location: 50231-51415 bp Ori: ENF74739.1 Feature: domain Description: PRK09692 Location: 50237-51392 bp Feature: domain Description: PRK09692 Location: 502 37-51392 bp Feature: gene Location: 51408-53036 bp Ori: ENF74740.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51816-52245 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51816-52 2 45 bp Feature: gene Location: 53033-53773 bp Feature: gene Location: 53789-53908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7