myRT

myRT report for GCA_000357905.2_ASM35790v2

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Seq: AQBG01000136.1 Escherichia coli P0304816.9 gecP03048169.contig.135, whole genome shotgun sequence (13831 bp)
Overview 1 RT 1: 5468-8365 bp Neighborhood of RT #1 [5468, 8475] RVT-GII GIIM D Ogr_Delta Feature: gene Location: 5468-5629 bp Feature: gene Location: 6054-6209 bp Feature: gene Location: 6332-7663 bp Ori: ENF63055.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6617-7304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 661 7-7304 bp Feature: domain Description: GIIM Note: maturase Location: 7421-7589 bp Feature: domain Description: GIIM Note: maturase Location: 7421 -7589 bp Feature: gene Location: 7801-8172 bp Ori: ENF63060.1 Feature: domain Description: D Location: 7831-8146 bp Feature: domain Description: D Location: 7831 -81 46 bp Feature: gene Location: 8215-8475 bp Ori: ENF63066.1 Feature: domain Description: Ogr_Delta Location: 8224-8365 bp Feature: domain Description: Ogr_Delta Location: 8224-8365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), D (PHA02561), Ogr_Delta (pfam04606)

Seq: AQBG01000132.1 Escherichia coli P0304816.9 gecP03048169.contig.131, whole genome shotgun sequence (965 bp)
Overview 1 RT 1: 48-870 bp Neighborhood of RT #1 [48, 905] RVT-GII GIIM HNHc Feature: gene Location: 48-905 bp Ori: ENF63289.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51-216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51-2 16 bp Feature: domain Description: GIIM Note: maturase Location: 267-501 bp Feature: domain Description: GIIM Note: maturase Location: 2 67-501 bp Feature: domain Description: HNHc Note: nucleases Location: 711-870 bp Feature: domain Description: HNHc Note: nucleases Location: 711-870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQBG01000005.1 Escherichia coli P0304816.9 gecP03048169.contig.4, whole genome shotgun sequence (86009 bp)
Overview 1 RT 1: 42821-53743 bp Neighborhood of RT #1 [42821, 53760] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 42821-43093 bp Feature: gene Location: 43546-44316 bp Feature: gene Location: 44378-46087 bp Ori: ENF77626.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44531-45128 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4453 1-45128 bp Feature: gene Location: 46224-46721 bp Feature: gene Location: 46961-47422 bp Ori: ENF77628.1 Gene: ahdIC Feature: domain Description: HTH_XRE Location: 46991-47159 bp Feature: domain Description: HTH_XRE Location: 46991-47159 bp Feature: gene Location: 47453-48634 bp Ori: ENF77629.1 Feature: domain Description: DUF4062 Location: 47468-47795 bp Feature: domain Description: DUF4062 Location: 47468-47795 bp Feature: gene Location: 49343-50527 bp Ori: ENF77630.1 Feature: domain Description: PRK09692 Location: 49349-50504 bp Feature: domain Description: PRK09692 Location: 493 49-50504 bp Feature: gene Location: 50520-52148 bp Ori: ENF77631.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50928-51357 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50928-513 57 bp Feature: gene Location: 52145-52885 bp Feature: gene Location: 53188-53760 bp Ori: ENF77633.1 Feature: domain Description: Psu Location: 53206-53743 bp Feature: domain Description: Psu Location: 53 206-53 743 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)