myRT

myRT report for GCA_000358145.2_ASM35814v2

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Seq: APZN01000065.1 Escherichia coli MP020980.1 gecMP0209801.contig.65, whole genome shotgun sequence (3231 bp)
Overview 1 RT 1: 119-3231 bp Neighborhood of RT #1 [119, 3231] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 119-310 bp Feature: gene Location: 381-515 bp Feature: gene Location: 588-2255 bp Feature: RT Description: RVT_N Location: 636-873 bp Feature: RT Description: RVT_N Location: 636-873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 924-1 566 bp Feature: domain Description: GIIM Note: maturase Location: 1617-1851 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 7-1 851 bp Feature: domain Description: HNHc Note: nucleases Location: 2061-2220 bp Feature: domain Description: HNHc Note: nucleases Location: 2061 -2220 bp Feature: gene Location: 2979-3231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: APZN01000100.1 Escherichia coli MP020980.1 gecMP0209801.contig.100, whole genome shotgun sequence (17345 bp)
Overview 1 RT 1: 6-4072 bp Neighborhood of RT #1 [6, 4072] RVT-Retrons FRG Feature: gene Location: 6-566 bp Feature: gene Location: 983-1138 bp Feature: gene Location: 1434-2411 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1641-2184 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1641-2 184 bp Feature: gene Location: 2520-3884 bp Feature: domain Description: FRG Location: 3087-3372 bp Feature: domain Description: FRG Location: 3087-3372 bp Feature: gene Location: 3932-4072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, FRG (smart00901)

Seq: APZN01000103.1 Escherichia coli MP020980.1 gecMP0209801.contig.103, whole genome shotgun sequence (48662 bp)
Overview 1 RT 1: 32973-36129 bp 2 RT 2: 45934-48663 bp Neighborhood of RT #1 [32973, 36146] DDE_Tnp_IS1 InsA RVT-GII PRK10276 Neighborhood of RT #2 [45934, 48662] InsE RVT-GII Rve Feature: gene Location: 32973-33269 bp Feature: domain Description: DDE_Tnp_IS1 Location: 32976-33267 bp Feature: domain Description: DDE_Tnp_IS1 Location: 3 2976-3 3 267 bp Feature: gene Location: 33395-33670 bp Feature: domain Description: InsA Location: 33401-33662 bp Feature: domain Description: InsA Location: 3 3 401-3 3 662 bp Feature: gene Location: 33822-34796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33831-34404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 83 1-3 4404 bp Feature: gene Location: 34944-35138 bp Feature: gene Location: 35715-36146 bp Feature: domain Description: PRK10276 Location: 35766-36129 bp Feature: domain Description: PRK10276 Location: 3 5766-3 6129 bp Feature: gene Location: 45934-46218 bp Feature: domain Description: InsE Location: 45946-46207 bp Feature: domain Description: InsE Location: 45946-46207 bp Feature: gene Location: 46982-47095 bp Feature: gene Location: 47292-48335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47550-48282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47550-48282 bp Feature: gene Location: 48372-48662 bp Feature: domain Description: Rve Location: 48375-48663 bp Feature: domain Description: Rve Location: 483 75-48663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), InsE (COG2963), Rve (COG3316)

Seq: APZN01000021.1 Escherichia coli MP020980.1 gecMP0209801.contig.20, whole genome shotgun sequence (1871 bp)
Overview 1 RT 1: 91-1693 bp Neighborhood of RT #1 [91, 1749] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 91-1749 bp Feature: RT Description: RVT_N Location: 103-346 bp Feature: RT Description: RVT_N Location: 103-34 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391-1027 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391-1027 bp Feature: domain Description: GIIM Note: maturase Location: 1078-1312 bp Feature: domain Description: GIIM Note: maturase Location: 1078-1312 bp Feature: domain Description: HNHc Note: nucleases Location: 1543-1693 bp Feature: domain Description: HNHc Note: nucleases Location: 154 3-1693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)