myRT

myRT report for GCA_000358185.2_ASM35818v2

Download annotations/find similar RTs

Seq: AQAG01000124.1 Escherichia coli P0304777.10 gecP030477710.contig.123, whole genome shotgun sequence (232650 bp)
Overview 1 RT 1: 53170-57052 bp Neighborhood of RT #1 [53170, 57057] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 53170-53628 bp Ori: ENE42944.1 Gene: dut Feature: domain Description: dut Location: 53176-53623 bp Feature: domain Description: dut Location: 531 76-53623 bp Feature: gene Location: 53735-54331 bp Ori: ENE42945.1 Gene: slmA Feature: domain Description: slmA Location: 53741-54317 bp Feature: domain Description: slmA Location: 53741 -5431 7 bp Feature: gene Location: 54377-55336 bp Ori: ENE42946.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54512-55061 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5451 2-55061 bp Feature: gene Location: 55634-56275 bp Ori: ENE42947.1 Gene: pyrE Feature: domain Description: pyrE Location: 55637-56270 bp Feature: domain Description: pyrE Location: 55637-56270 bp Feature: gene Location: 56341-57057 bp Ori: ENE42948.1 Gene: rph Feature: domain Description: rph Location: 56344-57052 bp Feature: domain Description: rph Location: 56344-57052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AQAG01000101.1 Escherichia coli P0304777.10 gecP030477710.contig.100, whole genome shotgun sequence (79993 bp)
Overview 1 RT 1: 1-3127 bp Neighborhood of RT #1 [1, 3153] YhhI YhhI IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 1-592 bp Ori: ENE46249.1 Feature: domain Description: YhhI Location: 4-364 bp Feature: domain Description: YhhI Location: 4-364 bp Feature: domain Description: YhhI Location: 424-589 bp Feature: domain Description: YhhI Location: 42 4-589 bp Feature: gene Location: 696-1454 bp Ori: ENE46250.1 Feature: domain Description: IS285 Location: 726-1416 bp Feature: domain Description: IS2 85 Location: 72 6-1416 bp Feature: gene Location: 1503-1742 bp Ori: ENE46251.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1620-1728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 162 0-172 8 bp Feature: gene Location: 2498-2971 bp Ori: ENE46252.1 Feature: domain Description: PRK15434 Location: 2501-2951 bp Feature: domain Description: PRK15434 Location: 2 501-2 951 bp Feature: gene Location: 2974-3153 bp Ori: ENE46253.1 Feature: domain Description: GDP_FS_SDR_e Location: 2977-3127 bp Feature: domain Description: GDP_FS_SDR_e Location: 2 977-312 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)

Seq: AQAG01000136.1 Escherichia coli P0304777.10 gecP030477710.contig.135, whole genome shotgun sequence (14655 bp)
Overview 1 RT 1: 4184-9992 bp Neighborhood of RT #1 [4184, 10006] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 4184-4987 bp Ori: ENE41025.1 Gene: cfaD Feature: domain Description: HTH_ARAC Location: 4721-4964 bp Feature: domain Description: HTH_ARAC Location: 4721-4964 bp Feature: gene Location: 5729-5875 bp Ori: ENE41026.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 5741-5852 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5741-5852 bp Feature: gene Location: 6066-7169 bp Ori: ENE41027.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6216-6867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6216-6867 bp Feature: domain Description: GIIM Note: maturase Location: 6945-7158 bp Feature: domain Description: GIIM Note: maturase Location: 6945-7158 bp Feature: gene Location: 7853-8452 bp Ori: ENE41028.1 Feature: domain Description: IS285 Location: 7877-8435 bp Feature: domain Description: IS285 Location: 7877-843 5 bp Feature: gene Location: 8915-10006 bp Ori: ENE41029.1 Gene: cfaE Feature: domain Description: CblD Location: 9017-9992 bp Feature: domain Description: CblD Location: 9017-9992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)