myRT

myRT report for GCA_000358205.2_ASM35820v2

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Seq: AQAH01000096.1 Escherichia coli P0304777.11 gecP030477711.contig.96, whole genome shotgun sequence (79653 bp)
Overview 1 RT 1: 1-2872 bp Neighborhood of RT #1 [1, 2898] DDE_Tnp_1_assoc IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 1-226 bp Ori: ENE56707.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 22-226 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 22-226 bp Feature: gene Location: 330-1088 bp Ori: ENE56708.1 Feature: domain Description: IS285 Location: 360-1050 bp Feature: domain Description: IS285 Location: 360-1 050 bp Feature: gene Location: 1137-1430 bp Ori: ENE56709.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1308-1416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 308-1 41 6 bp Feature: gene Location: 2132-2605 bp Ori: ENE56710.1 Feature: domain Description: PRK15434 Location: 2135-2585 bp Feature: domain Description: PRK1 5434 Location: 21 35-2585 bp Feature: gene Location: 2608-2898 bp Ori: ENE56711.1 Feature: domain Description: GDP_FS_SDR_e Location: 2680-2872 bp Feature: domain Description: GDP_FS_SDR_e Location: 2680-2872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)

Seq: AQAH01000117.1 Escherichia coli P0304777.11 gecP030477711.contig.117, whole genome shotgun sequence (229303 bp)
Overview 1 RT 1: 49916-53798 bp Neighborhood of RT #1 [49916, 53803] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 49916-50374 bp Ori: ENE53889.1 Gene: dut Feature: domain Description: dut Location: 49922-50369 bp Feature: domain Description: dut Location: 4992 2 -50369 bp Feature: gene Location: 50481-51077 bp Ori: ENE53890.1 Gene: slmA Feature: domain Description: slmA Location: 50487-51063 bp Feature: domain Description: slmA Location: 50487-51063 bp Feature: gene Location: 51123-52082 bp Ori: ENE53891.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 51258-51807 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 512 58-51807 bp Feature: gene Location: 52380-53021 bp Ori: ENE53892.1 Gene: pyrE Feature: domain Description: pyrE Location: 52383-53016 bp Feature: domain Description: pyrE Location: 52 383-53016 bp Feature: gene Location: 53087-53803 bp Ori: ENE53893.1 Gene: rph Feature: domain Description: rph Location: 53090-53798 bp Feature: domain Description: rph Location: 53090-53798 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AQAH01000131.1 Escherichia coli P0304777.11 gecP030477711.contig.131, whole genome shotgun sequence (7935 bp)
Overview 1 RT 1: 4079-7931 bp Neighborhood of RT #1 [4079, 7935] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 Feature: gene Location: 4079-4882 bp Ori: ENE52268.1 Gene: cfaD Feature: domain Description: HTH_ARAC Location: 4616-4859 bp Feature: domain Description: HTH_ARAC Location: 4616-4859 bp Feature: gene Location: 5624-5770 bp Ori: ENE52269.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 5636-5747 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 563 6-5747 bp Feature: gene Location: 5961-7064 bp Ori: ENE52270.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6111-6762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6111-6762 bp Feature: domain Description: GIIM Note: maturase Location: 6840-7053 bp Feature: domain Description: GIIM Note: maturase Location: 6840-7053 bp Feature: gene Location: 7748-7935 bp Ori: ENE52271.1 Feature: domain Description: IS285 Location: 7772-7931 bp Feature: domain Description: IS285 Location: 7772-793 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328)