myRT

myRT report for GCA_000358225.2_ASM35822v2

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Seq: AQAI01000131.1 Escherichia coli P0304777.12 gecP030477712.contig.139, whole genome shotgun sequence (1254 bp)
Overview 1 RT 1: 6-1145 bp Neighborhood of RT #1 [6, 1145] RVT-GII Feature: gene Location: 6-245 bp Ori: ENE56037.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123-231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 23-231 bp Feature: gene Location: 969-1145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: AQAI01000064.1 Escherichia coli P0304777.12 gecP030477712.contig.64, whole genome shotgun sequence (14758 bp)
Overview 1 RT 1: 4137-9945 bp Neighborhood of RT #1 [4137, 9959] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 4137-4940 bp Ori: ENE59690.1 Gene: cfaD Feature: domain Description: HTH_ARAC Location: 4674-4917 bp Feature: domain Description: HTH_ARAC Location: 4674-4917 bp Feature: gene Location: 5682-5828 bp Ori: ENE59691.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 5694-5805 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5694-5805 bp Feature: gene Location: 6019-7122 bp Ori: ENE59692.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6169-6820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6169-682 0 bp Feature: domain Description: GIIM Note: maturase Location: 6898-7111 bp Feature: domain Description: GIIM Note: maturase Location: 6898-7111 bp Feature: gene Location: 7806-8405 bp Ori: ENE59693.1 Feature: domain Description: IS285 Location: 7830-8388 bp Feature: domain Description: IS2 85 Location: 7830-8388 bp Feature: gene Location: 8868-9959 bp Ori: ENE59694.1 Gene: cfaE Feature: domain Description: CblD Location: 8970-9945 bp Feature: domain Description: CblD Location: 8970-9945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)

Seq: AQAI01000070.1 Escherichia coli P0304777.12 gecP030477712.contig.71, whole genome shotgun sequence (2872 bp)
Overview 1 RT 1: 1-2871 bp Neighborhood of RT #1 [1, 2872] RVT-GII IS285 YhhI YhhI Feature: gene Location: 1-305 bp Feature: gene Location: 1061-1300 bp Ori: ENE59279.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1178-1286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1178-1286 bp Feature: gene Location: 1349-2107 bp Ori: ENE59280.1 Feature: domain Description: IS285 Location: 1379-2069 bp Feature: domain Description: IS285 Location: 13 79-2069 bp Feature: gene Location: 2211-2872 bp Ori: ENE59281.1 Feature: domain Description: YhhI Location: 2214-2574 bp Feature: domain Description: YhhI Location: 2214-2574 bp Feature: domain Description: YhhI Location: 2634-2871 bp Feature: domain Description: YhhI Location: 263 4-2871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, IS285 (COG3328), YhhI (COG5433)

Seq: AQAI01000048.1 Escherichia coli P0304777.12 gecP030477712.contig.48, whole genome shotgun sequence (231358 bp)
Overview 1 RT 1: 51870-55752 bp Neighborhood of RT #1 [51870, 55757] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51870-52328 bp Ori: ENE60777.1 Gene: dut Feature: domain Description: dut Location: 51876-52323 bp Feature: domain Description: dut Location: 51876-52323 bp Feature: gene Location: 52435-53031 bp Ori: ENE60778.1 Gene: slmA Feature: domain Description: slmA Location: 52441-53017 bp Feature: domain Description: slmA Location: 524 4 1-53017 bp Feature: gene Location: 53077-54036 bp Ori: ENE60779.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53212-53761 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53212-53761 bp Feature: gene Location: 54334-54975 bp Ori: ENE60780.1 Gene: pyrE Feature: domain Description: pyrE Location: 54337-54970 bp Feature: domain Description: pyrE Location: 54 337-54 970 bp Feature: gene Location: 55041-55757 bp Ori: ENE60781.1 Gene: rph Feature: domain Description: rph Location: 55044-55752 bp Feature: domain Description: rph Location: 5504 4 -55752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)