myRT

myRT report for GCA_000358245.2_ASM35824v2

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Seq: AQAJ01000035.1 Escherichia coli P0304777.13 gecP030477713.contig.34, whole genome shotgun sequence (21289 bp)
Overview 1 RT 1: 1-2814 bp Neighborhood of RT #1 [1, 2840] DDE_Tnp_1_assoc IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 1-300 bp Ori: ENE66330.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 22-283 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 22-283 bp Feature: gene Location: 404-1162 bp Ori: ENE66331.1 Feature: domain Description: IS285 Location: 434-1124 bp Feature: domain Description: IS285 Location: 434-1 1 24 bp Feature: gene Location: 1211-1450 bp Ori: ENE66332.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1328-1436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 328-1 436 bp Feature: gene Location: 2206-2679 bp Ori: ENE66333.1 Gene: nudD Feature: domain Description: PRK15434 Location: 2209-2659 bp Feature: domain Description: PRK1 5434 Location: 2209-2659 bp Feature: gene Location: 2682-2840 bp Ori: ENE66334.1 Feature: domain Description: GDP_FS_SDR_e Location: 2685-2814 bp Feature: domain Description: GDP_FS_SDR_e Location: 2685-281 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)

Seq: AQAJ01000051.1 Escherichia coli P0304777.13 gecP030477713.contig.50, whole genome shotgun sequence (231273 bp)
Overview 1 RT 1: 51862-55744 bp Neighborhood of RT #1 [51862, 55749] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51862-52320 bp Ori: ENE62441.1 Gene: dut Feature: domain Description: dut Location: 51868-52315 bp Feature: domain Description: dut Location: 51868-52 315 bp Feature: gene Location: 52427-53023 bp Ori: ENE62442.1 Gene: slmA Feature: domain Description: slmA Location: 52433-53009 bp Feature: domain Description: slmA Location: 52 433-53009 bp Feature: gene Location: 53069-54028 bp Ori: ENE62443.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53204-53753 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 532 04-53753 bp Feature: gene Location: 54326-54967 bp Ori: ENE62444.1 Gene: pyrE Feature: domain Description: pyrE Location: 54329-54962 bp Feature: domain Description: pyrE Location: 5432 9-54962 bp Feature: gene Location: 55033-55749 bp Ori: ENE62445.1 Gene: rph Feature: domain Description: rph Location: 55036-55744 bp Feature: domain Description: rph Location: 55036-55744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AQAJ01000065.1 Escherichia coli P0304777.13 gecP030477713.contig.64, whole genome shotgun sequence (14461 bp)
Overview 1 RT 1: 4150-9958 bp Neighborhood of RT #1 [4150, 9972] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 4150-4953 bp Ori: ENE60597.1 Gene: cfaD Feature: domain Description: HTH_ARAC Location: 4687-4930 bp Feature: domain Description: HTH_ARAC Location: 4687-493 0 bp Feature: gene Location: 5695-5841 bp Ori: ENE60598.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 5707-5818 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5707-5818 bp Feature: gene Location: 6032-7135 bp Ori: ENE60599.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6182-6833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6182-683 3 bp Feature: domain Description: GIIM Note: maturase Location: 6911-7124 bp Feature: domain Description: GIIM Note: maturase Location: 6911-7124 bp Feature: gene Location: 7819-8418 bp Ori: ENE60600.1 Feature: domain Description: IS285 Location: 7843-8401 bp Feature: domain Description: IS285 Location: 7843 -8401 bp Feature: gene Location: 8881-9972 bp Ori: ENE60601.1 Gene: cfaE Feature: domain Description: CblD Location: 8983-9958 bp Feature: domain Description: CblD Location: 8983 -9958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)