myRT

myRT report for GCA_000358265.2_ASM35826v2

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Seq: AQAK01000105.1 Escherichia coli P0304777.14 gecP030477714.contig.104, whole genome shotgun sequence (281712 bp)
Overview 1 RT 1: 102418-106300 bp Neighborhood of RT #1 [102418, 106305] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 102418-102876 bp Ori: ENE67622.1 Gene: dut Feature: domain Description: dut Location: 102424-102871 bp Feature: domain Description: dut Location: 1 02424-1 02871 bp Feature: gene Location: 102983-103579 bp Ori: ENE67623.1 Gene: slmA Feature: domain Description: slmA Location: 102989-103565 bp Feature: domain Description: slmA Location: 1 02989-1 03565 bp Feature: gene Location: 103625-104584 bp Ori: ENE67624.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103760-104309 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 03760-1 04309 bp Feature: gene Location: 104882-105523 bp Ori: ENE67625.1 Gene: pyrE Feature: domain Description: pyrE Location: 104885-105518 bp Feature: domain Description: pyrE Location: 1 04885-1 0551 8 bp Feature: gene Location: 105589-106305 bp Ori: ENE67626.1 Gene: rph Feature: domain Description: rph Location: 105592-106300 bp Feature: domain Description: rph Location: 1 05592-1 06300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AQAK01000087.1 Escherichia coli P0304777.14 gecP030477714.contig.86, whole genome shotgun sequence (79416 bp)
Overview 1 RT 1: 57763-61272 bp Neighborhood of RT #1 [57763, 61298] YhhI YhhI IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 57763-58623 bp Ori: ENE71903.1 Feature: domain Description: YhhI Location: 57766-58126 bp Feature: domain Description: YhhI Location: 57766-5812 6 bp Feature: domain Description: YhhI Location: 58186-58540 bp Feature: domain Description: YhhI Location: 58186-58540 bp Feature: gene Location: 58727-59485 bp Ori: ENE71904.1 Feature: domain Description: IS285 Location: 58757-59447 bp Feature: domain Description: IS2 85 Location: 58757-59447 bp Feature: gene Location: 59534-59821 bp Ori: ENE71905.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59699-59807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59699-59807 bp Feature: gene Location: 60529-61002 bp Ori: ENE71906.1 Feature: domain Description: PRK15434 Location: 60532-60982 bp Feature: domain Description: PRK15434 Location: 60532 -60982 bp Feature: gene Location: 61005-61298 bp Ori: ENE71907.1 Feature: domain Description: GDP_FS_SDR_e Location: 61032-61272 bp Feature: domain Description: GDP_FS_SDR_e Location: 61032 -612 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)

Seq: AQAK01000115.1 Escherichia coli P0304777.14 gecP030477714.contig.114, whole genome shotgun sequence (14460 bp)
Overview 1 RT 1: 4187-9995 bp Neighborhood of RT #1 [4187, 10009] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 4187-4990 bp Ori: ENE65528.1 Gene: cfaD Feature: domain Description: HTH_ARAC Location: 4724-4967 bp Feature: domain Description: HTH_ARAC Location: 4724-4967 bp Feature: gene Location: 5732-5878 bp Ori: ENE65529.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 5744-5855 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5744-5855 bp Feature: gene Location: 6069-7172 bp Ori: ENE65530.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6219-6870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6219-6870 bp Feature: domain Description: GIIM Note: maturase Location: 6948-7161 bp Feature: domain Description: GIIM Note: maturase Location: 6948-7161 bp Feature: gene Location: 7856-8455 bp Ori: ENE65531.1 Feature: domain Description: IS285 Location: 7880-8438 bp Feature: domain Description: IS285 Location: 7880-843 8 bp Feature: gene Location: 8918-10009 bp Ori: ENE65532.1 Gene: cfaE Feature: domain Description: CblD Location: 9020-9995 bp Feature: domain Description: CblD Location: 9020-9995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)