myRT

myRT report for GCA_000358285.2_ASM35828v2

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Seq: AQAL01000121.1 Escherichia coli P0304777.15 gecP030477715.contig.120, whole genome shotgun sequence (230344 bp)
Overview 1 RT 1: 50813-54695 bp Neighborhood of RT #1 [50813, 54700] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 50813-51271 bp Feature: domain Description: dut Location: 50819-51266 bp Feature: domain Description: dut Location: 5081 9-51 266 bp Feature: gene Location: 51378-51974 bp Feature: domain Description: slmA Location: 51384-51960 bp Feature: domain Description: slmA Location: 51 384-51 960 bp Feature: gene Location: 52020-52979 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52155-52704 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 521 55-52704 bp Feature: gene Location: 53277-53918 bp Feature: domain Description: pyrE Location: 53280-53913 bp Feature: domain Description: pyrE Location: 53280-5391 3 bp Feature: gene Location: 53984-54700 bp Feature: domain Description: rph Location: 53987-54695 bp Feature: domain Description: rph Location: 53987-54695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AQAL01000135.1 Escherichia coli P0304777.15 gecP030477715.contig.134, whole genome shotgun sequence (14518 bp)
Overview 1 RT 1: 4143-9951 bp Neighborhood of RT #1 [4143, 9965] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 4143-4946 bp Feature: domain Description: HTH_ARAC Location: 4680-4923 bp Feature: domain Description: HTH_ARAC Location: 4680-492 3 bp Feature: gene Location: 5688-5834 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5700-5811 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5700-5811 bp Feature: gene Location: 6025-7128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6175-6826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6175-682 6 bp Feature: domain Description: GIIM Note: maturase Location: 6904-7117 bp Feature: domain Description: GIIM Note: maturase Location: 6904-7117 bp Feature: gene Location: 7812-8411 bp Feature: domain Description: IS285 Location: 7836-8394 bp Feature: domain Description: IS2 85 Location: 7836-8394 bp Feature: gene Location: 8874-9965 bp Feature: domain Description: CblD Location: 8976-9951 bp Feature: domain Description: CblD Location: 8976-9951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)