myRT

myRT report for GCA_000358315.1_ASM35831v1

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Seq: AQAN01000120.1 Escherichia coli P0304777.3 gecP03047773.contig.120, whole genome shotgun sequence (83213 bp)
Overview 1 RT 1: 47022-50904 bp Neighborhood of RT #1 [47022, 50909] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 47022-47480 bp Ori: ENE84314.1 Gene: dut Feature: domain Description: dut Location: 47028-47475 bp Feature: domain Description: dut Location: 47028-47475 bp Feature: gene Location: 47587-48183 bp Ori: ENE84339.1 Gene: slmA Feature: domain Description: slmA Location: 47593-48169 bp Feature: domain Description: slmA Location: 47593-481 69 bp Feature: gene Location: 48229-49188 bp Ori: ENE84307.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48364-48913 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 48364-4891 3 bp Feature: gene Location: 49486-50127 bp Ori: ENE84319.1 Gene: pyrE Feature: domain Description: pyrE Location: 49489-50122 bp Feature: domain Description: pyrE Location: 49489-501 22 bp Feature: gene Location: 50193-50909 bp Ori: ENE84308.1 Gene: rph Feature: domain Description: rph Location: 50196-50904 bp Feature: domain Description: rph Location: 501 96-50904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AQAN01000101.1 Escherichia coli P0304777.3 gecP03047773.contig.101, whole genome shotgun sequence (80069 bp)
Overview 1 RT 1: 1-3322 bp Neighborhood of RT #1 [1, 3348] YhhI YhhI IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 1-655 bp Ori: ENE87120.1 Feature: domain Description: YhhI Location: 4-364 bp Feature: domain Description: YhhI Location: 4-364 bp Feature: domain Description: YhhI Location: 424-652 bp Feature: domain Description: YhhI Location: 42 4-652 bp Feature: gene Location: 759-1517 bp Ori: ENE87139.1 Feature: domain Description: IS285 Location: 789-1479 bp Feature: domain Description: IS2 85 Location: 789-1479 bp Feature: gene Location: 1566-1859 bp Ori: ENE87094.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1737-1845 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1737-1845 bp Feature: gene Location: 2561-3034 bp Ori: ENE87129.1 Gene: nudD Feature: domain Description: PRK15434 Location: 2564-3014 bp Feature: domain Description: PRK15434 Location: 2 564-3014 bp Feature: gene Location: 3037-3348 bp Ori: ENE87101.1 Feature: domain Description: GDP_FS_SDR_e Location: 3127-3322 bp Feature: domain Description: GDP_FS_SDR_e Location: 312 7-332 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)

Seq: AQAN01000136.1 Escherichia coli P0304777.3 gecP03047773.contig.136, whole genome shotgun sequence (14698 bp)
Overview 1 RT 1: 4085-9893 bp Neighborhood of RT #1 [4085, 9907] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 4085-4888 bp Ori: ENE82898.1 Gene: cfaD Feature: domain Description: HTH_ARAC Location: 4622-4865 bp Feature: domain Description: HTH_ARAC Location: 4622-4865 bp Feature: gene Location: 5630-5776 bp Ori: ENE82893.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 5642-5753 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5642-5753 bp Feature: gene Location: 5967-7070 bp Ori: ENE82888.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6117-6768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6117-6768 bp Feature: domain Description: GIIM Note: maturase Location: 6846-7059 bp Feature: domain Description: GIIM Note: maturase Location: 6846-7059 bp Feature: gene Location: 7754-8353 bp Ori: ENE82903.1 Feature: domain Description: IS285 Location: 7778-8336 bp Feature: domain Description: IS285 Location: 7778-83 3 6 bp Feature: gene Location: 8816-9907 bp Ori: ENE82897.1 Gene: cfaE Feature: domain Description: CblD Location: 8918-9893 bp Feature: domain Description: CblD Location: 8918-9893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)