myRT

myRT report for GCA_000358335.2_ASM35833v2

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Seq: AQAP01000505.1 Escherichia coli P0304777.5 gecP03047775.contig.516, whole genome shotgun sequence (6133 bp)
Overview 1 RT 1: 1224-5475 bp Neighborhood of RT #1 [1224, 5492] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 Feature: gene Location: 1224-2027 bp Ori: ENE92102.1 Gene: cfaD Feature: domain Description: HTH_ARAC Location: 1761-2004 bp Feature: domain Description: HTH_ARAC Location: 1 761 -2004 bp Feature: gene Location: 2769-2912 bp Ori: ENE92103.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 2778-2889 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2778-2889 bp Feature: gene Location: 3106-4209 bp Ori: ENE92104.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3256-3907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3256-3907 bp Feature: domain Description: GIIM Note: maturase Location: 3985-4198 bp Feature: domain Description: GIIM Note: maturase Location: 3985-41 98 bp Feature: gene Location: 4893-5492 bp Ori: ENE92105.1 Feature: domain Description: IS285 Location: 4917-5475 bp Feature: domain Description: IS285 Location: 491 7-5475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328)

Seq: AQAP01000464.1 Escherichia coli P0304777.5 gecP03047775.contig.474, whole genome shotgun sequence (35185 bp)
Overview 1 RT 1: 9599-13481 bp Neighborhood of RT #1 [9599, 13486] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9599-10057 bp Ori: ENE95241.1 Gene: dut Feature: domain Description: dut Location: 9605-10052 bp Feature: domain Description: dut Location: 9605-10052 bp Feature: gene Location: 10164-10760 bp Ori: ENE95242.1 Gene: slmA Feature: domain Description: slmA Location: 10170-10746 bp Feature: domain Description: slmA Location: 10170-10746 bp Feature: gene Location: 10806-11765 bp Ori: ENE95243.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10941-11490 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10941-11490 bp Feature: gene Location: 12063-12704 bp Ori: ENE95244.1 Gene: pyrE Feature: domain Description: pyrE Location: 12066-12699 bp Feature: domain Description: pyrE Location: 12 066-12 699 bp Feature: gene Location: 12770-13486 bp Ori: ENE95245.1 Gene: rph Feature: domain Description: rph Location: 12773-13481 bp Feature: domain Description: rph Location: 12 773-13481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AQAP01000363.1 Escherichia coli P0304777.5 gecP03047775.contig.372, whole genome shotgun sequence (15490 bp)
Overview 1 RT 1: 797-4447 bp Neighborhood of RT #1 [797, 4473] YhhI YhhI YhhI IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 797-1933 bp Ori: ENF02476.1 Feature: domain Description: YhhI Location: 800-1163 bp Feature: domain Description: YhhI Location: 800-1163 bp Feature: domain Description: YhhI Location: 1220-1574 bp Feature: domain Description: YhhI Location: 1220-1574 bp Feature: domain Description: YhhI Location: 1592-1841 bp Feature: domain Description: YhhI Location: 1592-1841 bp Feature: gene Location: 2037-2795 bp Ori: ENF02477.1 Feature: domain Description: IS285 Location: 2067-2757 bp Feature: domain Description: IS285 Location: 2067-2757 bp Feature: gene Location: 2844-3137 bp Ori: ENF02478.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3015-3123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 015-3 123 bp Feature: gene Location: 3839-4312 bp Ori: ENF02479.1 Gene: nudD Feature: domain Description: PRK15434 Location: 3842-4292 bp Feature: domain Description: PRK1543 4 Location: 3 842-4292 bp Feature: gene Location: 4315-4473 bp Ori: ENF02480.1 Feature: domain Description: GDP_FS_SDR_e Location: 4318-4447 bp Feature: domain Description: GDP_FS_SDR_e Location: 43 18-4447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)