myRT

myRT report for GCA_000358355.2_ASM35835v2

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Seq: AQAO01000031.1 Escherichia coli P0304777.4 gecP03047774.contig.30, whole genome shotgun sequence (80108 bp)
Overview 1 RT 1: 1-3984 bp Neighborhood of RT #1 [1, 4010] YhhI YhhI IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 1-663 bp Ori: ENE93669.1 Feature: domain Description: YhhI Location: 4-364 bp Feature: domain Description: YhhI Location: 4-364 bp Feature: domain Description: YhhI Location: 424-664 bp Feature: domain Description: YhhI Location: 424-664 bp Feature: gene Location: 767-1525 bp Ori: ENE93670.1 Feature: domain Description: IS285 Location: 797-1487 bp Feature: domain Description: IS285 Location: 797-1 487 bp Feature: gene Location: 1574-1867 bp Ori: ENE93671.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1745-1853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 745-1 853 bp Feature: gene Location: 2569-3042 bp Ori: ENE93672.1 Feature: domain Description: PRK15434 Location: 2572-3022 bp Feature: domain Description: PRK1 5434 Location: 2572-3022 bp Feature: gene Location: 3045-4010 bp Ori: ENE93673.1 Gene: fcl Feature: domain Description: GDP_FS_SDR_e Location: 3060-3984 bp Feature: domain Description: GDP_FS_SDR_e Location: 3060-3984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)

Seq: AQAO01000059.1 Escherichia coli P0304777.4 gecP03047774.contig.58, whole genome shotgun sequence (14501 bp)
Overview 1 RT 1: 4142-9950 bp Neighborhood of RT #1 [4142, 9964] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 4142-4945 bp Ori: ENE90607.1 Gene: cfaD Feature: domain Description: HTH_ARAC Location: 4679-4922 bp Feature: domain Description: HTH_ARAC Location: 4679-492 2 bp Feature: gene Location: 5687-5833 bp Ori: ENE90608.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 5699-5810 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5699-5810 bp Feature: gene Location: 6024-7127 bp Ori: ENE90609.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6174-6825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6174-682 5 bp Feature: domain Description: GIIM Note: maturase Location: 6903-7116 bp Feature: domain Description: GIIM Note: maturase Location: 6903-7116 bp Feature: gene Location: 7811-8410 bp Ori: ENE90610.1 Feature: domain Description: IS285 Location: 7835-8393 bp Feature: domain Description: IS2 85 Location: 7835-8393 bp Feature: gene Location: 8873-9964 bp Ori: ENE90611.1 Gene: cfaE Feature: domain Description: CblD Location: 8975-9950 bp Feature: domain Description: CblD Location: 8975-9950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)

Seq: AQAO01000048.1 Escherichia coli P0304777.4 gecP03047774.contig.47, whole genome shotgun sequence (232636 bp)
Overview 1 RT 1: 53394-57276 bp Neighborhood of RT #1 [53394, 57281] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 53394-53852 bp Ori: ENE91340.1 Gene: dut Feature: domain Description: dut Location: 53400-53847 bp Feature: domain Description: dut Location: 53 400-53 847 bp Feature: gene Location: 53959-54555 bp Ori: ENE91341.1 Gene: slmA Feature: domain Description: slmA Location: 53965-54541 bp Feature: domain Description: slmA Location: 53 965-54541 bp Feature: gene Location: 54601-55560 bp Ori: ENE91342.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54736-55285 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5473 6-55285 bp Feature: gene Location: 55858-56499 bp Ori: ENE91343.1 Gene: pyrE Feature: domain Description: pyrE Location: 55861-56494 bp Feature: domain Description: pyrE Location: 55861-56494 bp Feature: gene Location: 56565-57281 bp Ori: ENE91344.1 Gene: rph Feature: domain Description: rph Location: 56568-57276 bp Feature: domain Description: rph Location: 56568-57276 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)