myRT

myRT report for GCA_000358375.1_ASM35837v1

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Seq: AQAQ01000053.1 Escherichia coli P0304777.7 gecP03047777.contig.52, whole genome shotgun sequence (231716 bp)
Overview 1 RT 1: 51926-55808 bp Neighborhood of RT #1 [51926, 55813] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 51926-52384 bp Ori: ENE98004.1 Gene: dut Feature: domain Description: dut Location: 51932-52379 bp Feature: domain Description: dut Location: 51 932-52379 bp Feature: gene Location: 52491-53087 bp Ori: ENE98005.1 Gene: slmA Feature: domain Description: slmA Location: 52497-53073 bp Feature: domain Description: slmA Location: 52497-53073 bp Feature: gene Location: 53133-54092 bp Ori: ENE98006.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53268-53817 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53268-5381 7 bp Feature: gene Location: 54390-55031 bp Ori: ENE98007.1 Gene: pyrE Feature: domain Description: pyrE Location: 54393-55026 bp Feature: domain Description: pyrE Location: 54393-55026 bp Feature: gene Location: 55097-55813 bp Ori: ENE98008.1 Gene: rph Feature: domain Description: rph Location: 55100-55808 bp Feature: domain Description: rph Location: 551 00-55808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AQAQ01000067.1 Escherichia coli P0304777.7 gecP03047777.contig.66, whole genome shotgun sequence (14711 bp)
Overview 1 RT 1: 4056-9864 bp Neighborhood of RT #1 [4056, 9878] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 4056-4859 bp Ori: ENE97052.1 Gene: cfaD Feature: domain Description: HTH_ARAC Location: 4593-4836 bp Feature: domain Description: HTH_ARAC Location: 4593-4836 bp Feature: gene Location: 5601-5747 bp Ori: ENE97053.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 5613-5724 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5613-572 4 bp Feature: gene Location: 5938-7041 bp Ori: ENE97054.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6088-6739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6088-6739 bp Feature: domain Description: GIIM Note: maturase Location: 6817-7030 bp Feature: domain Description: GIIM Note: maturase Location: 6817-7030 bp Feature: gene Location: 7725-8324 bp Ori: ENE97055.1 Feature: domain Description: IS285 Location: 7749-8307 bp Feature: domain Description: IS2 85 Location: 7749-8307 bp Feature: gene Location: 8787-9878 bp Ori: ENE97056.1 Gene: cfaE Feature: domain Description: CblD Location: 8889-9864 bp Feature: domain Description: CblD Location: 8889-9864 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)

Seq: AQAQ01000031.1 Escherichia coli P0304777.7 gecP03047777.contig.30, whole genome shotgun sequence (21266 bp)
Overview 1 RT 1: 1-2991 bp Neighborhood of RT #1 [1, 3017] YhhI YhhI IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 1-477 bp Ori: ENF00400.1 Feature: domain Description: YhhI Location: 4-367 bp Feature: domain Description: YhhI Location: 4-3 67 bp Feature: domain Description: YhhI Location: 424-478 bp Feature: domain Description: YhhI Location: 424-478 bp Feature: gene Location: 581-1339 bp Ori: ENF00401.1 Feature: domain Description: IS285 Location: 611-1301 bp Feature: domain Description: IS285 Location: 611-13 01 bp Feature: gene Location: 1388-1681 bp Ori: ENF00402.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1559-1667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1559-1667 bp Feature: gene Location: 2383-2856 bp Ori: ENF00403.1 Feature: domain Description: PRK15434 Location: 2386-2836 bp Feature: domain Description: PRK1543 4 Location: 23 86-283 6 bp Feature: gene Location: 2859-3017 bp Ori: ENF00404.1 Feature: domain Description: GDP_FS_SDR_e Location: 2862-2991 bp Feature: domain Description: GDP_FS_SDR_e Location: 2862-2991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)