myRT

myRT report for GCA_000358395.2_ASM35839v2

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Seq: AQAR01000130.1 Escherichia coli P0304777.8 gecP03047778.contig.129, whole genome shotgun sequence (44992 bp)
Overview 1 RT 1: 9973-13855 bp Neighborhood of RT #1 [9973, 13860] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9973-10431 bp Ori: ENF06077.1 Gene: dut Feature: domain Description: dut Location: 9979-10426 bp Feature: domain Description: dut Location: 9979-1 0426 bp Feature: gene Location: 10538-11134 bp Ori: ENF06078.1 Gene: slmA Feature: domain Description: slmA Location: 10544-11120 bp Feature: domain Description: slmA Location: 1 0544-1 1 1 20 bp Feature: gene Location: 11180-12139 bp Ori: ENF06079.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11315-11864 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 31 5-1 1 864 bp Feature: gene Location: 12437-13078 bp Ori: ENF06080.1 Gene: pyrE Feature: domain Description: pyrE Location: 12440-13073 bp Feature: domain Description: pyrE Location: 1 2440-1 3073 bp Feature: gene Location: 13144-13860 bp Ori: ENF06081.1 Gene: rph Feature: domain Description: rph Location: 13147-13855 bp Feature: domain Description: rph Location: 1 31 47-1 3855 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: AQAR01000158.1 Escherichia coli P0304777.8 gecP03047778.contig.157, whole genome shotgun sequence (7865 bp)
Overview 1 RT 1: 1224-5487 bp Neighborhood of RT #1 [1224, 5501] DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 1224-1370 bp Ori: ENF04753.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 1236-1347 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 12 36-1347 bp Feature: gene Location: 1561-2664 bp Ori: ENF04754.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1711-2362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1711-2 362 bp Feature: domain Description: GIIM Note: maturase Location: 2440-2653 bp Feature: domain Description: GIIM Note: maturase Location: 2 440-2 653 bp Feature: gene Location: 3348-3947 bp Ori: ENF04755.1 Feature: domain Description: IS285 Location: 3372-3930 bp Feature: domain Description: IS2 85 Location: 3372 -3930 bp Feature: gene Location: 4410-5501 bp Ori: ENF04756.1 Gene: cfaE Feature: domain Description: CblD Location: 4512-5487 bp Feature: domain Description: CblD Location: 4512 -5487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)

Seq: AQAR01000073.1 Escherichia coli P0304777.8 gecP03047778.contig.72, whole genome shotgun sequence (45199 bp)
Overview 1 RT 1: 1-2901 bp Neighborhood of RT #1 [1, 2927] DDE_Tnp_1_assoc IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 1-237 bp Ori: ENF09758.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 22-235 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 22-23 5 bp Feature: gene Location: 341-1099 bp Ori: ENF09759.1 Feature: domain Description: IS285 Location: 371-1061 bp Feature: domain Description: IS285 Location: 3 71-1061 bp Feature: gene Location: 1148-1435 bp Ori: ENF09760.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1313-1421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 13 -1421 bp Feature: gene Location: 2143-2616 bp Ori: ENF09761.1 Gene: nudD Feature: domain Description: PRK15434 Location: 2146-2596 bp Feature: domain Description: PRK1543 4 Location: 2146-2596 bp Feature: gene Location: 2619-2927 bp Ori: ENF09762.1 Gene: fcl Feature: domain Description: GDP_FS_SDR_e Location: 2709-2901 bp Feature: domain Description: GDP_FS_SDR_e Location: 2709-2901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_assoc (pfam13808), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)