myRT

myRT report for GCA_000358415.2_ASM35841v2

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Seq: AQAS01000011.1 Escherichia coli P0304777.9 gecP03047779.contig.10, whole genome shotgun sequence (298170 bp)
Overview 1 RT 1: 252087-255737 bp Neighborhood of RT #1 [252087, 255763] YhhI YhhI YhhI IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 252087-253223 bp Ori: ENF15523.1 Feature: domain Description: YhhI Location: 252090-252453 bp Feature: domain Description: YhhI Location: 252090-252453 bp Feature: domain Description: YhhI Location: 252510-252864 bp Feature: domain Description: YhhI Location: 25251 0-252864 bp Feature: domain Description: YhhI Location: 252882-253131 bp Feature: domain Description: YhhI Location: 252882-2531 31 bp Feature: gene Location: 253327-254085 bp Ori: ENF15524.1 Feature: domain Description: IS285 Location: 253357-254047 bp Feature: domain Description: IS285 Location: 253357-254047 bp Feature: gene Location: 254134-254373 bp Ori: ENF15525.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254251-254359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 254251 -254359 bp Feature: gene Location: 255129-255602 bp Ori: ENF15526.1 Gene: nudD Feature: domain Description: PRK15434 Location: 255132-255582 bp Feature: domain Description: PRK1 5434 Location: 2551 32-255582 bp Feature: gene Location: 255605-255763 bp Ori: ENF15527.1 Feature: domain Description: GDP_FS_SDR_e Location: 255608-255737 bp Feature: domain Description: GDP_FS_SDR_e Location: 255608-255737 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)

Seq: AQAS01000104.1 Escherichia coli P0304777.9 gecP03047779.contig.103, whole genome shotgun sequence (11887 bp)
Overview 1 RT 1: 1-5442 bp Neighborhood of RT #1 [1, 5456] DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 1-110 bp Feature: gene Location: 1179-1325 bp Ori: ENF07649.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 1191-1302 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1191-1302 bp Feature: gene Location: 1516-2619 bp Ori: ENF07650.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1666-2317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1666-2 317 bp Feature: domain Description: GIIM Note: maturase Location: 2395-2608 bp Feature: domain Description: GIIM Note: maturase Location: 2 395-2 608 bp Feature: gene Location: 3303-3902 bp Ori: ENF07651.1 Feature: domain Description: IS285 Location: 3327-3885 bp Feature: domain Description: IS2 85 Location: 332 7-3885 bp Feature: gene Location: 4365-5456 bp Ori: ENF07652.1 Gene: cfaE Feature: domain Description: CblD Location: 4467-5442 bp Feature: domain Description: CblD Location: 4467-5442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)

Seq: AQAS01000081.1 Escherichia coli P0304777.9 gecP03047779.contig.80, whole genome shotgun sequence (48200 bp)
Overview 1 RT 1: 13181-17063 bp Neighborhood of RT #1 [13181, 17068] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 13181-13639 bp Ori: ENF09378.1 Gene: dut Feature: domain Description: dut Location: 13187-13634 bp Feature: domain Description: dut Location: 13 187-13 63 4 bp Feature: gene Location: 13746-14342 bp Ori: ENF09379.1 Gene: slmA Feature: domain Description: slmA Location: 13752-14328 bp Feature: domain Description: slmA Location: 13 752-143 28 bp Feature: gene Location: 14388-15347 bp Ori: ENF09380.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14523-15072 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 14523 -15072 bp Feature: gene Location: 15645-16286 bp Ori: ENF09381.1 Gene: pyrE Feature: domain Description: pyrE Location: 15648-16281 bp Feature: domain Description: pyrE Location: 15648-16281 bp Feature: gene Location: 16352-17068 bp Ori: ENF09382.1 Gene: rph Feature: domain Description: rph Location: 16355-17063 bp Feature: domain Description: rph Location: 163 55-17063 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)