myRT

myRT report for GCA_000358435.2_ASM35843v2

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Seq: AQAT01000005.1 Escherichia coli P0304816.10 gecP030481610.contig.4, whole genome shotgun sequence (97347 bp)
Overview 1 RT 1: 42862-53784 bp Neighborhood of RT #1 [42862, 53801] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 42862-43206 bp Feature: gene Location: 43587-44357 bp Feature: gene Location: 44419-46128 bp Ori: ENF26894.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44572-45169 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44572-451 69 bp Feature: gene Location: 46265-46762 bp Feature: gene Location: 47002-47463 bp Ori: ENF26896.1 Gene: ahdIC Feature: domain Description: HTH_XRE Location: 47032-47200 bp Feature: domain Description: HTH_XRE Location: 47032-47200 bp Feature: gene Location: 47494-48675 bp Ori: ENF26897.1 Feature: domain Description: DUF4062 Location: 47509-47836 bp Feature: domain Description: DUF4062 Location: 47509-47836 bp Feature: gene Location: 49384-50568 bp Ori: ENF26898.1 Feature: domain Description: PRK09692 Location: 49390-50545 bp Feature: domain Description: PRK09692 Location: 49390-50545 bp Feature: gene Location: 50561-52189 bp Ori: ENF26899.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50969-51398 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50969-51 398 bp Feature: gene Location: 52186-52926 bp Feature: gene Location: 53229-53801 bp Ori: ENF26901.1 Feature: domain Description: Psu Location: 53247-53784 bp Feature: domain Description: Psu Location: 53247-53784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: AQAT01000089.1 Escherichia coli P0304816.10 gecP030481610.contig.88, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 205-2306 bp Neighborhood of RT #1 [205, 2341] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 205-396 bp Feature: gene Location: 467-601 bp Feature: gene Location: 674-2341 bp Ori: ENF19301.1 Feature: domain Description: RVT_N Location: 722-959 bp Feature: domain Description: RVT_N Location: 72 2 -959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010-1652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1010-1652 bp Feature: domain Description: GIIM Note: maturase Location: 1703-1937 bp Feature: domain Description: GIIM Note: maturase Location: 1703-1937 bp Feature: domain Description: HNHc Note: nucleases Location: 2147-2306 bp Feature: domain Description: HNHc Note: nucleases Location: 2 147-2 306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)