myRT

myRT report for GCA_000358455.2_ASM35845v2

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Seq: AQAU01000001.1 Escherichia coli P0304816.11 gecP030481611.contig.0, whole genome shotgun sequence (3583 bp)
Overview 1 RT 1: 1-2837 bp Neighborhood of RT #1 [1, 2837] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-127 bp Feature: gene Location: 701-2368 bp Ori: ENF28788.1 Feature: domain Description: RVT_N Location: 749-986 bp Feature: domain Description: RVT_N Location: 749-986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1037-1679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 037-1 679 bp Feature: domain Description: GIIM Note: maturase Location: 1730-1964 bp Feature: domain Description: GIIM Note: maturase Location: 1 730-1 964 bp Feature: domain Description: HNHc Note: nucleases Location: 2174-2333 bp Feature: domain Description: HNHc Note: nucleases Location: 21 74-2333 bp Feature: gene Location: 2441-2575 bp Feature: gene Location: 2646-2837 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQAU01000099.1 Escherichia coli P0304816.11 gecP030481611.contig.99, whole genome shotgun sequence (131794 bp)
Overview 1 RT 1: 42951-53150 bp Neighborhood of RT #1 [42951, 53150] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Feature: gene Location: 42951-43223 bp Feature: gene Location: 43676-44446 bp Feature: gene Location: 44508-46217 bp Ori: ENF23467.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44661-45258 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44661-452 58 bp Feature: gene Location: 46354-46851 bp Feature: gene Location: 47091-47552 bp Ori: ENF23469.1 Gene: ahdIC Feature: domain Description: HTH_XRE Location: 47121-47289 bp Feature: domain Description: HTH_XRE Location: 4712 1-472 89 bp Feature: gene Location: 47583-48764 bp Ori: ENF23470.1 Feature: domain Description: DUF4062 Location: 47598-47925 bp Feature: domain Description: DUF4062 Location: 47598-4792 5 bp Feature: gene Location: 49473-50657 bp Ori: ENF23471.1 Feature: domain Description: PRK09692 Location: 49479-50634 bp Feature: domain Description: PRK09692 Location: 49479-50634 bp Feature: gene Location: 50650-52278 bp Ori: ENF23472.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51058-51487 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51058-51487 bp Feature: gene Location: 52275-53015 bp Feature: gene Location: 53031-53150 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7