myRT

myRT report for GCA_000358475.1_ASM35847v1

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Seq: AQAW01000163.1 Escherichia coli P0304816.13 gecP030481613.contig.162, whole genome shotgun sequence (1401 bp)
Overview 1 RT 1: 35-1401 bp Neighborhood of RT #1 [35, 1401] RVT-GII GIIM HNHc Feature: gene Location: 35-946 bp Ori: ENF28943.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62-257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62-257 bp Feature: domain Description: GIIM Note: maturase Location: 308-542 bp Feature: domain Description: GIIM Note: maturase Location: 308-542 bp Feature: domain Description: HNHc Note: nucleases Location: 752-911 bp Feature: domain Description: HNHc Note: nucleases Location: 752-91 1 bp Feature: gene Location: 1260-1401 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQAW01000006.1 Escherichia coli P0304816.13 gecP030481613.contig.5, whole genome shotgun sequence (97132 bp)
Overview 1 RT 1: 42608-53530 bp Neighborhood of RT #1 [42608, 53547] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 42608-42880 bp Feature: gene Location: 43333-44037 bp Feature: gene Location: 44165-45874 bp Ori: ENF43344.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44318-44915 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44318-44915 bp Feature: gene Location: 46011-46508 bp Feature: gene Location: 46748-47209 bp Ori: ENF43346.1 Gene: ahdIC Feature: domain Description: HTH_XRE Location: 46778-46946 bp Feature: domain Description: HTH_XRE Location: 46778-46946 bp Feature: gene Location: 47240-48421 bp Ori: ENF43347.1 Feature: domain Description: DUF4062 Location: 47255-47582 bp Feature: domain Description: DUF4062 Location: 472 55-47582 bp Feature: gene Location: 49130-50314 bp Ori: ENF43348.1 Feature: domain Description: PRK09692 Location: 49136-50291 bp Feature: domain Description: PRK09692 Location: 49136-502 91 bp Feature: gene Location: 50307-51935 bp Ori: ENF43349.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50715-51144 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50715-51144 bp Feature: gene Location: 51932-52672 bp Feature: gene Location: 52975-53547 bp Ori: ENF43351.1 Feature: domain Description: Psu Location: 52993-53530 bp Feature: domain Description: Psu Location: 52 993-53530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: AQAW01000132.1 Escherichia coli P0304816.13 gecP030481613.contig.131, whole genome shotgun sequence (14034 bp)
Overview 1 RT 1: 5754-9126 bp Neighborhood of RT #1 [5754, 9126] Ogr_Delta D RVT-GII GIIM Feature: gene Location: 5754-6014 bp Ori: ENF31331.1 Feature: domain Description: Ogr_Delta Location: 5763-5904 bp Feature: domain Description: Ogr_Delta Location: 5763 -5904 bp Feature: gene Location: 6057-6428 bp Ori: ENF31332.1 Feature: domain Description: D Location: 6087-6402 bp Feature: domain Description: D Location: 6087-6402 bp Feature: gene Location: 6566-7897 bp Ori: ENF31333.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6851-7538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6851-753 8 bp Feature: domain Description: GIIM Note: maturase Location: 7655-7823 bp Feature: domain Description: GIIM Note: maturase Location: 7655-7823 bp Feature: gene Location: 8600-8761 bp Feature: gene Location: 8779-9126 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), D (PHA02561), RVT-GII, GIIM (pfam08388)