myRT

myRT report for GCA_000358495.2_ASM35849v2

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Seq: AQAV01000110.1 Escherichia coli P0304816.12 gecP030481612.contig.109, whole genome shotgun sequence (1874 bp)
Overview 1 RT 1: 12-1794 bp Neighborhood of RT #1 [12, 1829] RVT-GII GIIM HNHc Feature: gene Location: 12-131 bp Feature: gene Location: 128-319 bp Feature: gene Location: 633-1829 bp Ori: ENF25752.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 639-1140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 639-1 1 40 bp Feature: domain Description: GIIM Note: maturase Location: 1191-1425 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 91 -1 425 bp Feature: domain Description: HNHc Note: nucleases Location: 1635-1794 bp Feature: domain Description: HNHc Note: nucleases Location: 1 635-1 794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQAV01000005.1 Escherichia coli P0304816.12 gecP030481612.contig.4, whole genome shotgun sequence (86035 bp)
Overview 1 RT 1: 42886-53808 bp Neighborhood of RT #1 [42886, 53825] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 42886-43158 bp Feature: gene Location: 43611-44381 bp Feature: gene Location: 44443-46152 bp Ori: ENF35675.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44596-45193 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44596-45193 bp Feature: gene Location: 46289-46786 bp Feature: gene Location: 47026-47487 bp Ori: ENF35677.1 Gene: ahdIC Feature: domain Description: HTH_XRE Location: 47056-47224 bp Feature: domain Description: HTH_XRE Location: 47056-472 2 4 bp Feature: gene Location: 47518-48699 bp Ori: ENF35678.1 Feature: domain Description: DUF4062 Location: 47533-47860 bp Feature: domain Description: DUF4062 Location: 47533-47860 bp Feature: gene Location: 49408-50592 bp Ori: ENF35679.1 Feature: domain Description: PRK09692 Location: 49414-50569 bp Feature: domain Description: PRK09692 Location: 49414-50569 bp Feature: gene Location: 50585-52213 bp Ori: ENF35680.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50993-51422 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50993-5142 2 bp Feature: gene Location: 52210-52950 bp Feature: gene Location: 53253-53825 bp Ori: ENF35682.1 Feature: domain Description: Psu Location: 53271-53808 bp Feature: domain Description: Psu Location: 532 71-53808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)

Seq: AQAV01000143.1 Escherichia coli P0304816.12 gecP030481612.contig.142, whole genome shotgun sequence (15237 bp)
Overview 1 RT 1: 6138-9400 bp Neighborhood of RT #1 [6138, 9510] RVT-GII GIIM D Ogr_Delta Feature: gene Location: 6138-6485 bp Feature: gene Location: 6503-6661 bp Feature: gene Location: 7367-8698 bp Ori: ENF23683.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7652-8339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7652-83 3 9 bp Feature: domain Description: GIIM Note: maturase Location: 8456-8624 bp Feature: domain Description: GIIM Note: maturase Location: 8456-8624 bp Feature: gene Location: 8836-9207 bp Ori: ENF23684.1 Feature: domain Description: D Location: 8866-9181 bp Feature: domain Description: D Location: 8866-9181 bp Feature: gene Location: 9250-9510 bp Ori: ENF23685.1 Feature: domain Description: Ogr_Delta Location: 9259-9400 bp Feature: domain Description: Ogr_Delta Location: 9259-9400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), D (PHA02561), Ogr_Delta (pfam04606)