myRT

myRT report for GCA_000358515.2_ASM35851v2

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Seq: AQAY01000098.1 Escherichia coli P0304816.15 gecP030481615.contig.97, whole genome shotgun sequence (1814 bp)
Overview 1 RT 1: 57-1437 bp Neighborhood of RT #1 [57, 1437] RVT-GII GIIM HNHc Feature: gene Location: 57-968 bp Ori: ENF41205.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84-279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84-279 bp Feature: domain Description: GIIM Note: maturase Location: 330-564 bp Feature: domain Description: GIIM Note: maturase Location: 330-564 bp Feature: domain Description: HNHc Note: nucleases Location: 774-933 bp Feature: domain Description: HNHc Note: nucleases Location: 774-933 bp Feature: gene Location: 1041-1175 bp Feature: gene Location: 1246-1437 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQAY01000005.1 Escherichia coli P0304816.15 gecP030481615.contig.4, whole genome shotgun sequence (86061 bp)
Overview 1 RT 1: 42904-53826 bp Neighborhood of RT #1 [42904, 53843] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 42904-43176 bp Feature: gene Location: 43629-44399 bp Feature: gene Location: 44461-46170 bp Ori: ENF54539.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44614-45211 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44614-452 11 bp Feature: gene Location: 46307-46804 bp Feature: gene Location: 47044-47505 bp Ori: ENF54541.1 Gene: ahdIC Feature: domain Description: HTH_XRE Location: 47074-47242 bp Feature: domain Description: HTH_XRE Location: 47074-472 42 bp Feature: gene Location: 47536-48717 bp Ori: ENF54542.1 Feature: domain Description: DUF4062 Location: 47551-47878 bp Feature: domain Description: DUF4062 Location: 47551-47878 bp Feature: gene Location: 49426-50610 bp Ori: ENF54543.1 Feature: domain Description: PRK09692 Location: 49432-50587 bp Feature: domain Description: PRK09692 Location: 49432 -50587 bp Feature: gene Location: 50603-52231 bp Ori: ENF54544.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51011-51440 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51011-51440 bp Feature: gene Location: 52228-52968 bp Feature: gene Location: 53271-53843 bp Ori: ENF54546.1 Feature: domain Description: Psu Location: 53289-53826 bp Feature: domain Description: Psu Location: 532 89-5382 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)