myRT

myRT report for GCA_000358535.2_ASM35853v2

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Seq: AQAZ01000023.1 Escherichia coli P0304816.2 gecP03048162.contig.22, whole genome shotgun sequence (13551 bp)
Overview 1 RT 1: 4968-8224 bp Neighborhood of RT #1 [4968, 8334] RVT-GII GIIM D Ogr_Delta Feature: gene Location: 4968-5309 bp Feature: gene Location: 5327-5488 bp Feature: gene Location: 6191-7522 bp Ori: ENF58767.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6476-7163 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6476-71 63 bp Feature: domain Description: GIIM Note: maturase Location: 7280-7448 bp Feature: domain Description: GIIM Note: maturase Location: 7280-7448 bp Feature: gene Location: 7660-8031 bp Ori: ENF58768.1 Feature: domain Description: D Location: 7690-8005 bp Feature: domain Description: D Location: 7690-8005 bp Feature: gene Location: 8074-8334 bp Ori: ENF58769.1 Feature: domain Description: Ogr_Delta Location: 8083-8224 bp Feature: domain Description: Ogr_Delta Location: 8083-8224 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), D (PHA02561), Ogr_Delta (pfam04606)

Seq: AQAZ01000098.1 Escherichia coli P0304816.2 gecP03048162.contig.97, whole genome shotgun sequence (132216 bp)
Overview 1 RT 1: 43105-53304 bp Neighborhood of RT #1 [43105, 53304] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Feature: gene Location: 43105-43377 bp Feature: gene Location: 43830-44600 bp Feature: gene Location: 44662-46371 bp Ori: ENF57078.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44815-45412 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44815-45412 bp Feature: gene Location: 46508-47005 bp Feature: gene Location: 47245-47706 bp Ori: ENF57080.1 Gene: ahdIC Feature: domain Description: HTH_XRE Location: 47275-47443 bp Feature: domain Description: HTH_XRE Location: 472 75-47443 bp Feature: gene Location: 47737-48918 bp Ori: ENF57081.1 Feature: domain Description: DUF4062 Location: 47752-48079 bp Feature: domain Description: DUF4062 Location: 47752 -48079 bp Feature: gene Location: 49627-50811 bp Ori: ENF57082.1 Feature: domain Description: PRK09692 Location: 49633-50788 bp Feature: domain Description: PRK09692 Location: 49633-50788 bp Feature: gene Location: 50804-52432 bp Ori: ENF57083.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51212-51641 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 512 12 -51641 bp Feature: gene Location: 52429-53169 bp Feature: gene Location: 53185-53304 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7

Seq: AQAZ01000053.1 Escherichia coli P0304816.2 gecP03048162.contig.52, whole genome shotgun sequence (1237 bp)
Overview 1 RT 1: 46-1237 bp Neighborhood of RT #1 [46, 1237] RVT-GII GIIM HNHc Feature: gene Location: 46-819 bp Ori: ENF58235.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49-13 0 bp Feature: domain Description: GIIM Note: maturase Location: 181-415 bp Feature: domain Description: GIIM Note: maturase Location: 181-415 bp Feature: domain Description: HNHc Note: nucleases Location: 625-784 bp Feature: domain Description: HNHc Note: nucleases Location: 625-784 bp Feature: gene Location: 892-1026 bp Feature: gene Location: 1097-1237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)