myRT

myRT report for GCA_000358575.2_ASM35857v2

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Seq: AQBU01000057.1 Escherichia coli p0305293.11 gecp030529311.contig.56, whole genome shotgun sequence (17308 bp)
Overview 1 RT 1: 1-3495 bp Neighborhood of RT #1 [1, 3495] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-128 bp Feature: gene Location: 420-689 bp Feature: gene Location: 1324-2991 bp Feature: RT Description: RVT_N Location: 1372-1609 bp Feature: RT Description: RVT_N Location: 1 372-1 609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1660-2302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 660-2302 bp Feature: domain Description: GIIM Note: maturase Location: 2353-2587 bp Feature: domain Description: GIIM Note: maturase Location: 2353-2587 bp Feature: domain Description: HNHc Note: nucleases Location: 2797-2956 bp Feature: domain Description: HNHc Note: nucleases Location: 2797-2956 bp Feature: gene Location: 3135-3290 bp Feature: gene Location: 3304-3495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQBU01000199.1 Escherichia coli p0305293.11 gecp030529311.contig.200, whole genome shotgun sequence (18627 bp)
Overview 1 RT 1: 39-2604 bp Neighborhood of RT #1 [39, 2604] PRK09183 PHA02517 RVT-GII GIIM Feature: gene Location: 39-269 bp Feature: domain Description: PRK09183 Location: 141-267 bp Feature: domain Description: PRK09183 Location: 141-2 67 bp Feature: gene Location: 313-663 bp Feature: domain Description: PHA02517 Location: 316-637 bp Feature: domain Description: PHA02 517 Location: 316-637 bp Feature: gene Location: 786-2294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044-1776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044-1776 bp Feature: domain Description: GIIM Note: maturase Location: 1851-2049 bp Feature: domain Description: GIIM Note: maturase Location: 1851-2 049 bp Feature: gene Location: 2333-2455 bp Feature: gene Location: 2491-2604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), PRK09183 (transposase/IS protein; Provisional), RVT-GII, GIIM (pfam08388)

Seq: AQBU01000232.1 Escherichia coli p0305293.11 gecp030529311.contig.234, whole genome shotgun sequence (17999 bp)
Overview 1 RT 1: 14194-17479 bp Neighborhood of RT #1 [14194, 17479] Ogr_Delta D RVT-GII GIIM DDE_Tnp_Tn3 Feature: gene Location: 14194-14454 bp Feature: domain Description: Ogr_Delta Location: 14203-14344 bp Feature: domain Description: Ogr_Delta Location: 14203 -143 44 bp Feature: gene Location: 14497-14868 bp Feature: domain Description: D Location: 14527-14842 bp Feature: domain Description: D Location: 14527-14842 bp Feature: gene Location: 15006-16337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15291-15978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15291-15978 bp Feature: domain Description: GIIM Note: maturase Location: 16095-16263 bp Feature: domain Description: GIIM Note: maturase Location: 16095-16263 bp Feature: gene Location: 16840-17031 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 16843-16951 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 16843 -16951 bp Feature: gene Location: 17345-17479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), D (PHA02561), RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526)