myRT

myRT report for GCA_000358615.2_ASM35861v2

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Seq: AQBW01000130.1 Escherichia coli p0305293.15 gecp030529315.contig.129, whole genome shotgun sequence (8442 bp)
Overview 1 RT 1: 42-3468 bp Neighborhood of RT #1 [42, 3468] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 42-185 bp Feature: gene Location: 199-354 bp Feature: gene Location: 498-2165 bp Feature: RT Description: RVT_N Location: 546-783 bp Feature: RT Description: RVT_N Location: 546-783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 834-1476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 834-1 476 bp Feature: domain Description: GIIM Note: maturase Location: 1527-1761 bp Feature: domain Description: GIIM Note: maturase Location: 1 527-1 761 bp Feature: domain Description: HNHc Note: nucleases Location: 1971-2130 bp Feature: domain Description: HNHc Note: nucleases Location: 1 971 -21 30 bp Feature: gene Location: 2800-3048 bp Feature: gene Location: 3331-3468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQBW01000071.1 Escherichia coli p0305293.15 gecp030529315.contig.70, whole genome shotgun sequence (7162 bp)
Overview 1 RT 1: 409-6919 bp Neighborhood of RT #1 [409, 6919] RVT-GII GIIM Peptidase_S6 autotrans_barl Feature: gene Location: 409-1740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694-1381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694-1381 bp Feature: domain Description: GIIM Note: maturase Location: 1498-1666 bp Feature: domain Description: GIIM Note: maturase Location: 1498-1666 bp Feature: gene Location: 2539-6633 bp Feature: domain Description: Peptidase_S6 Location: 2692-4876 bp Feature: domain Description: Peptidase_S6 Location: 2 692 -4876 bp Feature: domain Description: autotrans_barl Location: 5410-6631 bp Feature: domain Description: autotrans_barl Location: 5410-6631 bp Feature: gene Location: 6803-6919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: AQBW01000049.1 Escherichia coli p0305293.15 gecp030529315.contig.48, whole genome shotgun sequence (18773 bp)
Overview 1 RT 1: 1-3215 bp Neighborhood of RT #1 [1, 3280] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1-223 bp Feature: gene Location: 267-617 bp Feature: domain Description: PHA02517 Location: 270-591 bp Feature: domain Description: PHA02517 Location: 270-591 bp Feature: gene Location: 740-2248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-1730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 998-173 0 bp Feature: domain Description: GIIM Note: maturase Location: 1805-2003 bp Feature: domain Description: GIIM Note: maturase Location: 1805-2003 bp Feature: gene Location: 2445-2558 bp Feature: gene Location: 2855-3280 bp Feature: domain Description: PHA02517 Location: 2876-3215 bp Feature: domain Description: PHA02517 Location: 2876-3 215 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: AQBW01000155.1 Escherichia coli p0305293.15 gecp030529315.contig.154, whole genome shotgun sequence (11864 bp)
Overview 1 RT 1: 409-2442 bp Neighborhood of RT #1 [409, 2552] RVT-GII GIIM D Ogr_Delta Feature: gene Location: 409-1740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694-1381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 694 -1381 bp Feature: domain Description: GIIM Note: maturase Location: 1498-1666 bp Feature: domain Description: GIIM Note: maturase Location: 14 98-1666 bp Feature: gene Location: 1878-2249 bp Feature: domain Description: D Location: 1908-2223 bp Feature: domain Description: D Location: 1908-2223 bp Feature: gene Location: 2292-2552 bp Feature: domain Description: Ogr_Delta Location: 2301-2442 bp Feature: domain Description: Ogr_Delta Location: 2301-24 4 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), Ogr_Delta (pfam04606), RVT-GII, GIIM (pfam08388)

Seq: AQBW01000072.1 Escherichia coli p0305293.15 gecp030529315.contig.71, whole genome shotgun sequence (8049 bp)
Overview 1 RT 1: 4390-7941 bp Neighborhood of RT #1 [4390, 8015] Phage_integrase RVT-GII GIIM Feature: gene Location: 4390-5187 bp Feature: domain Description: Phage_integrase Location: 4522-5101 bp Feature: domain Description: Phage_integrase Location: 45 22-5 101 bp Feature: gene Location: 5184-5837 bp Feature: gene Location: 6684-8015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6969-7656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6969-765 6 bp Feature: domain Description: GIIM Note: maturase Location: 7773-7941 bp Feature: domain Description: GIIM Note: maturase Location: 7773-7941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-GII, GIIM (pfam08388)

Seq: AQBW01000115.1 Escherichia coli p0305293.15 gecp030529315.contig.114, whole genome shotgun sequence (2894 bp)
Overview 1 RT 1: 35-2503 bp Neighborhood of RT #1 [35, 2661] RVT-GII GIIM DDE_Tnp_Tn3 rve_3 Feature: gene Location: 35-1366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320-1007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 320-1007 bp Feature: domain Description: GIIM Note: maturase Location: 1124-1292 bp Feature: domain Description: GIIM Note: maturase Location: 1124-1292 bp Feature: gene Location: 1869-2084 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1872-2004 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1872-2004 bp Feature: gene Location: 2374-2661 bp Feature: domain Description: rve_3 Location: 2422-2503 bp Feature: domain Description: rve_3 Location: 2422-2503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_Tn3 (pfam01526), rve_3 (pfam13683), RVT-GII, GIIM (pfam08388)