myRT

myRT report for GCA_000358635.2_ASM35863v2

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Seq: AQBX01000105.1 Escherichia coli p0305293.2 gecp03052932.contig.104, whole genome shotgun sequence (18452 bp)
Overview 1 RT 1: 41-3212 bp Neighborhood of RT #1 [41, 3277] PRK09183 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 41-226 bp Feature: domain Description: PRK09183 Location: 44-224 bp Feature: domain Description: PRK091 83 Location: 44-224 bp Feature: gene Location: 270-620 bp Feature: domain Description: PHA02517 Location: 273-594 bp Feature: domain Description: PHA0251 7 Location: 273-594 bp Feature: gene Location: 743-2251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1001-1733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 001 -1 733 bp Feature: domain Description: GIIM Note: maturase Location: 1808-2006 bp Feature: domain Description: GIIM Note: maturase Location: 1 808-2006 bp Feature: gene Location: 2290-2412 bp Feature: gene Location: 2858-3277 bp Feature: domain Description: PHA02517 Location: 2873-3212 bp Feature: domain Description: PHA0251 7 Location: 2873-321 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), PRK09183 (transposase/IS protein; Provisional), RVT-GII, GIIM (pfam08388)

Seq: AQBX01000031.1 Escherichia coli p0305293.2 gecp03052932.contig.30, whole genome shotgun sequence (11260 bp)
Overview 1 RT 1: 42-1991 bp Neighborhood of RT #1 [42, 2101] RVT-GII GIIM D Ogr_Delta Feature: gene Location: 42-1289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243-930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 43-930 bp Feature: domain Description: GIIM Note: maturase Location: 1047-1215 bp Feature: domain Description: GIIM Note: maturase Location: 1047-12 15 bp Feature: gene Location: 1427-1798 bp Feature: domain Description: D Location: 1457-1772 bp Feature: domain Description: D Location: 1457-1772 bp Feature: gene Location: 1841-2101 bp Feature: domain Description: Ogr_Delta Location: 1850-1991 bp Feature: domain Description: Ogr_Delta Location: 1850-1991 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), Ogr_Delta (pfam04606), RVT-GII, GIIM (pfam08388)

Seq: AQBX01000051.1 Escherichia coli p0305293.2 gecp03052932.contig.50, whole genome shotgun sequence (6662 bp)
Overview 1 RT 1: 481-6547 bp Neighborhood of RT #1 [481, 6621] Peptidase_S6 autotrans_barl RVT-GII GIIM Feature: gene Location: 481-4575 bp Feature: domain Description: Peptidase_S6 Location: 634-2818 bp Feature: domain Description: Peptidase_S6 Location: 63 4-2818 bp Feature: domain Description: autotrans_barl Location: 3352-4573 bp Feature: domain Description: autotrans_barl Location: 3 3 52-4573 bp Feature: gene Location: 5374-6621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5575-6262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5575-6262 bp Feature: domain Description: GIIM Note: maturase Location: 6379-6547 bp Feature: domain Description: GIIM Note: maturase Location: 63 79-6547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: AQBX01000102.1 Escherichia coli p0305293.2 gecp03052932.contig.101, whole genome shotgun sequence (10492 bp)
Overview 1 RT 1: 934-3105 bp Neighborhood of RT #1 [934, 3105] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 934-2601 bp Feature: RT Description: RVT_N Location: 982-1219 bp Feature: RT Description: RVT_N Location: 982-1219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270-1912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1270-1912 bp Feature: domain Description: GIIM Note: maturase Location: 1963-2197 bp Feature: domain Description: GIIM Note: maturase Location: 1963-2197 bp Feature: domain Description: HNHc Note: nucleases Location: 2407-2566 bp Feature: domain Description: HNHc Note: nucleases Location: 24 07-2566 bp Feature: gene Location: 2745-2900 bp Feature: gene Location: 2914-3105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)