myRT

myRT report for GCA_000358715.2_ASM35871v2

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Seq: AQCE01000074.1 Escherichia coli p0305293.9 gecp03052939.contig.74, whole genome shotgun sequence (18732 bp)
Overview 1 RT 1: 75-3740 bp Neighborhood of RT #1 [75, 3751] PRK09183 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 75-368 bp Feature: domain Description: PRK09183 Location: 78-366 bp Feature: domain Description: PRK091 83 Location: 78-366 bp Feature: gene Location: 412-762 bp Feature: domain Description: PHA02517 Location: 415-736 bp Feature: domain Description: PHA0251 7 Location: 41 5-736 bp Feature: gene Location: 885-2393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1143-1875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 43-1 875 bp Feature: domain Description: GIIM Note: maturase Location: 1950-2148 bp Feature: domain Description: GIIM Note: maturase Location: 1 950-21 48 bp Feature: gene Location: 3000-3419 bp Feature: domain Description: PHA02517 Location: 3015-3354 bp Feature: domain Description: PHA0251 7 Location: 301 5-3354 bp Feature: gene Location: 3467-3751 bp Feature: domain Description: InsE Location: 3479-3740 bp Feature: domain Description: InsE Location: 3479-3740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), PRK09183 (transposase/IS protein; Provisional), RVT-GII, GIIM (pfam08388)

Seq: AQCE01000061.1 Escherichia coli p0305293.9 gecp03052939.contig.61, whole genome shotgun sequence (17455 bp)
Overview 1 RT 1: 504-2537 bp Neighborhood of RT #1 [504, 2647] RVT-GII GIIM D Ogr_Delta Feature: gene Location: 504-1835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 789-1476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 789-1476 bp Feature: domain Description: GIIM Note: maturase Location: 1593-1761 bp Feature: domain Description: GIIM Note: maturase Location: 1593-1761 bp Feature: gene Location: 1973-2344 bp Feature: domain Description: D Location: 2003-2318 bp Feature: domain Description: D Location: 2 003-2 318 bp Feature: gene Location: 2387-2647 bp Feature: domain Description: Ogr_Delta Location: 2396-2537 bp Feature: domain Description: Ogr_Delta Location: 2 396-2 537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), Ogr_Delta (pfam04606), RVT-GII, GIIM (pfam08388)

Seq: AQCE01000185.1 Escherichia coli p0305293.9 gecp03052939.contig.185, whole genome shotgun sequence (3993 bp)
Overview 1 RT 1: 651-3623 bp Neighborhood of RT #1 [651, 3623] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 651-842 bp Feature: gene Location: 856-1011 bp Feature: gene Location: 1155-2822 bp Feature: RT Description: RVT_N Location: 1203-1440 bp Feature: RT Description: RVT_N Location: 1203 -1440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1491-2133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1491-213 3 bp Feature: domain Description: GIIM Note: maturase Location: 2184-2418 bp Feature: domain Description: GIIM Note: maturase Location: 2184-2418 bp Feature: domain Description: HNHc Note: nucleases Location: 2628-2787 bp Feature: domain Description: HNHc Note: nucleases Location: 2628-2787 bp Feature: gene Location: 3396-3623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)