myRT

myRT report for GCA_000358755.2_ASM35875v2

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Seq: APWZ01000701.1 Escherichia coli 178850 gec178850.contig.711, whole genome shotgun sequence (2444 bp)
Overview 1 RT 1: 697-2299 bp Neighborhood of RT #1 [697, 2355] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 697-2355 bp Feature: RT Description: RVT_N Location: 709-952 bp Feature: RT Description: RVT_N Location: 709-952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 997-1633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 997-1 633 bp Feature: domain Description: GIIM Note: maturase Location: 1684-1918 bp Feature: domain Description: GIIM Note: maturase Location: 1 684-1 91 8 bp Feature: domain Description: HNHc Note: nucleases Location: 2149-2299 bp Feature: domain Description: HNHc Note: nucleases Location: 21 49-2299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: APWZ01000612.1 Escherichia coli 178850 gec178850.contig.620, whole genome shotgun sequence (1987 bp)
Overview 1 RT 1: 1-1853 bp Neighborhood of RT #1 [1, 1853] RVT-GII GIIM HNHc Feature: gene Location: 1-1467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-745 bp Feature: domain Description: GIIM Note: maturase Location: 796-1030 bp Feature: domain Description: GIIM Note: maturase Location: 796-1030 bp Feature: domain Description: HNHc Note: nucleases Location: 1261-1411 bp Feature: domain Description: HNHc Note: nucleases Location: 12 61-1411 bp Feature: gene Location: 1728-1853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: APWZ01000562.1 Escherichia coli 178850 gec178850.contig.565, whole genome shotgun sequence (2002 bp)
Overview 1 RT 1: 1-762 bp Neighborhood of RT #1 [1, 1202] Rve RVT-Retrons Feature: gene Location: 1-264 bp Feature: domain Description: Rve Location: 4-265 bp Feature: domain Description: Rve Location: 4-265 bp Feature: gene Location: 255-1202 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 330-762 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 3 0-762 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-Retrons

Seq: APWZ01000728.1 Escherichia coli 178850 gec178850.contig.738, whole genome shotgun sequence (12017 bp)
Overview 1 RT 1: 1-2346 bp Neighborhood of RT #1 [1, 2441] RVT-GII GIIM HNHc DUF1281 DUF1281_C Feature: gene Location: 1-1467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109-74 5 bp Feature: domain Description: GIIM Note: maturase Location: 796-1030 bp Feature: domain Description: GIIM Note: maturase Location: 796-1030 bp Feature: domain Description: HNHc Note: nucleases Location: 1261-1411 bp Feature: domain Description: HNHc Note: nucleases Location: 1261-14 11 bp Feature: gene Location: 1727-1852 bp Feature: gene Location: 2034-2441 bp Feature: domain Description: DUF1281 Location: 2037-2166 bp Feature: domain Description: DUF1281 Location: 2037-2166 bp Feature: domain Description: DUF1281_C Location: 2172-2346 bp Feature: domain Description: DUF1281_C Location: 2172-234 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)

Seq: APWZ01000530.1 Escherichia coli 178850 gec178850.contig.533, whole genome shotgun sequence (4566 bp)
Overview 1 RT 1: 1007-4566 bp Neighborhood of RT #1 [1007, 4566] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1007-1198 bp Feature: gene Location: 1269-1385 bp Feature: gene Location: 1476-3143 bp Feature: RT Description: RVT_N Location: 1524-1761 bp Feature: RT Description: RVT_N Location: 15 24-1761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1812-2454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1812-245 4 bp Feature: domain Description: GIIM Note: maturase Location: 2505-2739 bp Feature: domain Description: GIIM Note: maturase Location: 25 05 -2739 bp Feature: domain Description: HNHc Note: nucleases Location: 2949-3108 bp Feature: domain Description: HNHc Note: nucleases Location: 2949-3108 bp Feature: gene Location: 3857-4003 bp Feature: gene Location: 4294-4566 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: APWZ01000426.1 Escherichia coli 178850 gec178850.contig.428, whole genome shotgun sequence (34133 bp)
Overview 1 RT 1: 9534-13417 bp Neighborhood of RT #1 [9534, 13422] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9534-9992 bp Feature: domain Description: dut Location: 9540-9987 bp Feature: domain Description: dut Location: 9540-9987 bp Feature: gene Location: 10099-10695 bp Feature: domain Description: slmA Location: 10105-10681 bp Feature: domain Description: slmA Location: 10105-106 81 bp Feature: gene Location: 10741-11700 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10876-11425 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10876 -11425 bp Feature: gene Location: 11998-12639 bp Feature: domain Description: pyrE Location: 12001-12634 bp Feature: domain Description: pyrE Location: 12001-126 34 bp Feature: gene Location: 12706-13422 bp Feature: domain Description: rph Location: 12709-13417 bp Feature: domain Description: rph Location: 12709-13417 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576)