myRT

myRT report for GCA_000358895.1_ASM35889v1

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Seq: APWY01000343.1 Escherichia coli 178200 gec178200.contig.343, whole genome shotgun sequence (4879 bp)
Overview 1 RT 1: 334-4597 bp Neighborhood of RT #1 [334, 4611] DDE_Tnp_IS66_C RVT-GII GIIM IS285 CblD Feature: gene Location: 334-480 bp Ori: ENG78560.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 346-457 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 346-457 bp Feature: gene Location: 671-1774 bp Ori: ENG78558.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 821-1472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 821 -1 472 bp Feature: domain Description: GIIM Note: maturase Location: 1550-1763 bp Feature: domain Description: GIIM Note: maturase Location: 1 550-1 763 bp Feature: gene Location: 2458-3057 bp Ori: ENG78557.1 Feature: domain Description: IS285 Location: 2482-3040 bp Feature: domain Description: IS285 Location: 2482-3040 bp Feature: gene Location: 3520-4611 bp Ori: ENG78559.1 Gene: cfaE Feature: domain Description: CblD Location: 3622-4597 bp Feature: domain Description: CblD Location: 3622-4597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), IS285 (COG3328), CblD (pfam07434)

Seq: APWY01000177.1 Escherichia coli 178200 gec178200.contig.177, whole genome shotgun sequence (13547 bp)
Overview 1 RT 1: 132-2695 bp Neighborhood of RT #1 [132, 2721] IS285 RVT-GII PRK15434 GDP_FS_SDR_e Feature: gene Location: 132-890 bp Ori: ENG82728.1 Feature: domain Description: IS285 Location: 162-852 bp Feature: domain Description: IS2 85 Location: 162 -852 bp Feature: gene Location: 939-1178 bp Ori: ENG82722.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1056-1164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1056-1164 bp Feature: gene Location: 1934-2407 bp Ori: ENG82729.1 Feature: domain Description: PRK15434 Location: 1937-2387 bp Feature: domain Description: PRK15434 Location: 1937-2 387 bp Feature: gene Location: 2410-2721 bp Ori: ENG82731.1 Feature: domain Description: GDP_FS_SDR_e Location: 2500-2695 bp Feature: domain Description: GDP_FS_SDR_e Location: 2 500-2 695 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, PRK15434 (GDP-mannose mannosyl hydrolase), GDP_FS_SDR_e (cd05239)

Seq: APWY01000287.1 Escherichia coli 178200 gec178200.contig.287, whole genome shotgun sequence (34311 bp)
Overview 1 RT 1: 9772-13654 bp Neighborhood of RT #1 [9772, 13659] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9772-10230 bp Ori: ENG80726.1 Gene: dut Feature: domain Description: dut Location: 9778-10225 bp Feature: domain Description: dut Location: 9778-10225 bp Feature: gene Location: 10337-10933 bp Ori: ENG80708.1 Gene: slmA Feature: domain Description: slmA Location: 10343-10919 bp Feature: domain Description: slmA Location: 103 43 -10919 bp Feature: gene Location: 10979-11938 bp Ori: ENG80707.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11114-11663 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11114-11663 bp Feature: gene Location: 12236-12877 bp Ori: ENG80710.1 Gene: pyrE Feature: domain Description: pyrE Location: 12239-12872 bp Feature: domain Description: pyrE Location: 1223 9-12872 bp Feature: gene Location: 12943-13659 bp Ori: ENG80725.1 Gene: rph Feature: domain Description: rph Location: 12946-13654 bp Feature: domain Description: rph Location: 12946-13 654 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)