myRT

myRT report for GCA_000358935.2_ASM35893v2

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Seq: APZD01000135.1 Escherichia coli P0302308.14 gecP030230814.contig.134, whole genome shotgun sequence (11539 bp)
Overview 1 RT 1: 4-4421 bp Neighborhood of RT #1 [4, 4465] PHA02517 RVT-GII GIIM PHA02517 HTH_LUXR Feature: gene Location: 4-216 bp Feature: domain Description: PHA02517 Location: 7-151 bp Feature: domain Description: PHA0251 7 Location: 7-1 51 bp Feature: gene Location: 824-2332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1082-1814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 082-1 81 4 bp Feature: domain Description: GIIM Note: maturase Location: 1889-2087 bp Feature: domain Description: GIIM Note: maturase Location: 1 889-2087 bp Feature: gene Location: 2398-2901 bp Feature: domain Description: PHA02517 Location: 2401-2890 bp Feature: domain Description: PHA0251 7 Location: 2401 -2890 bp Feature: gene Location: 3881-4465 bp Feature: domain Description: HTH_LUXR Location: 4280-4421 bp Feature: domain Description: HTH_LUXR Location: 4280-4421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), HTH_LUXR (smart00421), RVT-GII, GIIM (pfam08388)

Seq: APZD01000012.1 Escherichia coli P0302308.14 gecP030230814.contig.11, whole genome shotgun sequence (32264 bp)
Overview 1 RT 1: 19028-23245 bp Neighborhood of RT #1 [19028, 23245] HTH_ARAC DDE_Tnp_IS66_C RVT-GII GIIM Feature: gene Location: 19028-19831 bp Feature: domain Description: HTH_ARAC Location: 19565-19808 bp Feature: domain Description: HTH_ARAC Location: 19565-19808 bp Feature: gene Location: 20668-20814 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 20680-20791 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 0680-2 0791 bp Feature: gene Location: 20915-22108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21065-21716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1065-2 1716 bp Feature: domain Description: GIIM Note: maturase Location: 21794-22019 bp Feature: domain Description: GIIM Note: maturase Location: 2 1794-2 2 019 bp Feature: gene Location: 22689-22970 bp Feature: gene Location: 23057-23245 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_ARAC (smart00342), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388)

Seq: APZD01000055.1 Escherichia coli P0302308.14 gecP030230814.contig.54, whole genome shotgun sequence (15149 bp)
Overview 1 RT 1: 8991-15081 bp Neighborhood of RT #1 [8991, 15146] ResIII COG3587 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 8991-11861 bp Feature: domain Description: ResIII Location: 9153-9753 bp Feature: domain Description: ResIII Location: 9153 -9753 bp Feature: domain Description: COG3587 Location: 10185-10380 bp Feature: domain Description: COG3 587 Location: 10185-103 80 bp Feature: gene Location: 12249-12665 bp Feature: domain Description: PHA02517 Location: 12252-12654 bp Feature: domain Description: PHA02517 Location: 12252-12654 bp Feature: gene Location: 12818-14326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13076-13808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 076-13 808 bp Feature: domain Description: GIIM Note: maturase Location: 13883-14081 bp Feature: domain Description: GIIM Note: maturase Location: 13 883 -14081 bp Feature: gene Location: 14934-15146 bp Feature: domain Description: PHA02517 Location: 14937-15081 bp Feature: domain Description: PHA02517 Location: 1493 7-15081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ResIII (pfam04851), COG3587 (Restriction endonuclease )

Seq: APZD01000075.1 Escherichia coli P0302308.14 gecP030230814.contig.74, whole genome shotgun sequence (165218 bp)
Overview 1 RT 1: 160871-165199 bp Neighborhood of RT #1 [160871, 165210] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 160871-162073 bp Feature: domain Description: HTH_38 Location: 160880-160994 bp Feature: domain Description: HTH_38 Location: 160880-160994 bp Feature: domain Description: Tra8 Location: 161030-162011 bp Feature: domain Description: Tra8 Location: 161030-162011 bp Feature: gene Location: 162286-162525 bp Feature: domain Description: PHA02517 Location: 162289-162460 bp Feature: domain Description: PHA02517 Location: 162289-1624 60 bp Feature: gene Location: 163133-164641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163391-164123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163391-164 123 bp Feature: domain Description: GIIM Note: maturase Location: 164198-164396 bp Feature: domain Description: GIIM Note: maturase Location: 164 198-164 396 bp Feature: gene Location: 164794-165210 bp Feature: domain Description: PHA02517 Location: 164797-165199 bp Feature: domain Description: PHA02517 Location: 164 797-165199 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_38 (pfam13936), Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: APZD01000079.1 Escherichia coli P0302308.14 gecP030230814.contig.78, whole genome shotgun sequence (31580 bp)
Overview 1 RT 1: 7302-11902 bp Neighborhood of RT #1 [7302, 11907] RVT-GII RVT-GII GIIM LacI PBP1_GntR Feature: gene Location: 7302-7646 bp Feature: gene Location: 7856-8182 bp Feature: gene Location: 9091-9525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9283-9499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9283-9499 bp Feature: gene Location: 9579-10349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9582-9909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95 82-9909 bp Feature: domain Description: GIIM Note: maturase Location: 9957-10182 bp Feature: domain Description: GIIM Note: maturase Location: 995 7-10182 bp Feature: gene Location: 10657-10794 bp Feature: gene Location: 10876-11907 bp Feature: domain Description: LacI Location: 10918-11053 bp Feature: domain Description: LacI Location: 10918-1105 3 bp Feature: domain Description: PBP1_GntR Location: 11092-11902 bp Feature: domain Description: PBP1_GntR Location: 11092-11902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575)