myRT

myRT report for GCA_000358955.2_ASM35895v2

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Seq: AQBC01000080.1 Escherichia coli P0304816.5 gecP03048165.contig.81, whole genome shotgun sequence (2422 bp)
Overview 1 RT 1: 57-2422 bp Neighborhood of RT #1 [57, 2422] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 57-1724 bp Ori: ENH44888.1 Feature: domain Description: RVT_N Location: 105-342 bp Feature: domain Description: RVT_N Location: 1 05-342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1 035 bp Feature: domain Description: GIIM Note: maturase Location: 1086-1320 bp Feature: domain Description: GIIM Note: maturase Location: 1 086-1 320 bp Feature: domain Description: HNHc Note: nucleases Location: 1530-1689 bp Feature: domain Description: HNHc Note: nucleases Location: 1 530-1 689 bp Feature: gene Location: 2298-2422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQBC01000100.1 Escherichia coli P0304816.5 gecP03048165.contig.101, whole genome shotgun sequence (15254 bp)
Overview 1 RT 1: 6138-9400 bp Neighborhood of RT #1 [6138, 9510] RVT-GII GIIM D Ogr_Delta Feature: gene Location: 6138-6485 bp Feature: gene Location: 6503-6664 bp Feature: gene Location: 7367-8698 bp Ori: ENH44330.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7652-8339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7652 -8339 bp Feature: domain Description: GIIM Note: maturase Location: 8456-8624 bp Feature: domain Description: GIIM Note: maturase Location: 8456-862 4 bp Feature: gene Location: 8836-9207 bp Ori: ENH44331.1 Feature: domain Description: D Location: 8866-9181 bp Feature: domain Description: D Location: 8866-9181 bp Feature: gene Location: 9250-9510 bp Ori: ENH44332.1 Feature: domain Description: Ogr_Delta Location: 9259-9400 bp Feature: domain Description: Ogr_Delta Location: 92 59-9400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), D (PHA02561), Ogr_Delta (pfam04606)

Seq: AQBC01000113.1 Escherichia coli P0304816.5 gecP03048165.contig.114, whole genome shotgun sequence (97119 bp)
Overview 1 RT 1: 42608-53530 bp Neighborhood of RT #1 [42608, 53547] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 42608-42880 bp Feature: gene Location: 43333-44103 bp Feature: gene Location: 44165-45874 bp Ori: ENH43478.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44318-44915 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 443 18-44915 bp Feature: gene Location: 46011-46508 bp Feature: gene Location: 46748-47209 bp Ori: ENH43480.1 Gene: ahdIC Feature: domain Description: HTH_XRE Location: 46778-46946 bp Feature: domain Description: HTH_XRE Location: 46778-46946 bp Feature: gene Location: 47240-48421 bp Ori: ENH43481.1 Feature: domain Description: DUF4062 Location: 47255-47582 bp Feature: domain Description: DUF4062 Location: 47255-47582 bp Feature: gene Location: 49130-50314 bp Ori: ENH43482.1 Feature: domain Description: PRK09692 Location: 49136-50291 bp Feature: domain Description: PRK09692 Location: 4913 6-50291 bp Feature: gene Location: 50307-51935 bp Ori: ENH43483.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50715-51144 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 50715-51144 bp Feature: gene Location: 51932-52672 bp Feature: gene Location: 52975-53547 bp Ori: ENH43485.1 Feature: domain Description: Psu Location: 52993-53530 bp Feature: domain Description: Psu Location: 52993 -53 53 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)