myRT

myRT report for GCA_000359015.2_ASM35901v2

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Seq: AQBA01000113.1 Escherichia coli P0304816.3 gecP03048163.contig.113, whole genome shotgun sequence (13628 bp)
Overview 1 RT 1: 5615-8987 bp Neighborhood of RT #1 [5615, 8987] Ogr_Delta D RVT-GII GIIM Feature: gene Location: 5615-5875 bp Ori: ENH27100.1 Feature: domain Description: Ogr_Delta Location: 5624-5765 bp Feature: domain Description: Ogr_Delta Location: 5624-5765 bp Feature: gene Location: 5918-6289 bp Ori: ENH27101.1 Feature: domain Description: D Location: 5948-6263 bp Feature: domain Description: D Location: 5948-6263 bp Feature: gene Location: 6427-7758 bp Ori: ENH27102.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6712-7399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671 2-7399 bp Feature: domain Description: GIIM Note: maturase Location: 7516-7684 bp Feature: domain Description: GIIM Note: maturase Location: 751 6-7684 bp Feature: gene Location: 8461-8622 bp Feature: gene Location: 8640-8987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), D (PHA02561), RVT-GII, GIIM (pfam08388)

Seq: AQBA01000006.1 Escherichia coli P0304816.3 gecP03048163.contig.5, whole genome shotgun sequence (82505 bp)
Overview 1 RT 1: 39334-50256 bp Neighborhood of RT #1 [39334, 50273] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 39334-39606 bp Feature: gene Location: 40059-40829 bp Feature: gene Location: 40891-42600 bp Ori: ENH39259.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41044-41641 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 41044-41641 bp Feature: gene Location: 42737-43234 bp Feature: gene Location: 43474-43935 bp Ori: ENH39261.1 Gene: ahdIC Feature: domain Description: HTH_XRE Location: 43504-43672 bp Feature: domain Description: HTH_XRE Location: 43504-43672 bp Feature: gene Location: 43966-45147 bp Ori: ENH39262.1 Feature: domain Description: DUF4062 Location: 43981-44308 bp Feature: domain Description: DUF4062 Location: 43981-44308 bp Feature: gene Location: 45856-47040 bp Ori: ENH39263.1 Feature: domain Description: PRK09692 Location: 45862-47017 bp Feature: domain Description: PRK09692 Location: 45862 -47017 bp Feature: gene Location: 47033-48661 bp Ori: ENH39264.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47441-47870 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47441-47870 bp Feature: gene Location: 48658-49398 bp Feature: gene Location: 49701-50273 bp Ori: ENH39266.1 Feature: domain Description: Psu Location: 49719-50256 bp Feature: domain Description: Psu Location: 49719-502 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)