myRT

myRT report for GCA_000359035.2_ASM35903v2

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Seq: AQBB01000003.1 Escherichia coli P0304816.4 gecP03048164.contig.2, whole genome shotgun sequence (14015 bp)
Overview 1 RT 1: 5784-9156 bp Neighborhood of RT #1 [5784, 9156] Ogr_Delta D RVT-GII GIIM Feature: gene Location: 5784-6044 bp Ori: ENH44352.1 Feature: domain Description: Ogr_Delta Location: 5793-5934 bp Feature: domain Description: Ogr_Delta Location: 5793-5934 bp Feature: gene Location: 6087-6458 bp Ori: ENH44353.1 Feature: domain Description: D Location: 6117-6432 bp Feature: domain Description: D Location: 61 1 7-6432 bp Feature: gene Location: 6596-7927 bp Ori: ENH44354.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6881-7568 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6881 -7568 bp Feature: domain Description: GIIM Note: maturase Location: 7685-7853 bp Feature: domain Description: GIIM Note: maturase Location: 7685-7853 bp Feature: gene Location: 8630-8791 bp Feature: gene Location: 8809-9156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ogr_Delta (pfam04606), D (PHA02561), RVT-GII, GIIM (pfam08388)

Seq: AQBB01000098.1 Escherichia coli P0304816.4 gecP03048164.contig.98, whole genome shotgun sequence (132022 bp)
Overview 1 RT 1: 43028-53950 bp Neighborhood of RT #1 [43028, 53967] RVT-Retrons HTH_XRE DUF4062 PRK09692 RVT-UG7 Psu Feature: gene Location: 43028-43300 bp Feature: gene Location: 43753-44523 bp Feature: gene Location: 44585-46294 bp Ori: ENH38149.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44738-45335 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 44738-45335 bp Feature: gene Location: 46431-46928 bp Feature: gene Location: 47168-47629 bp Ori: ENH38151.1 Gene: ahdIC Feature: domain Description: HTH_XRE Location: 47198-47366 bp Feature: domain Description: HTH_XRE Location: 47198-47366 bp Feature: gene Location: 47660-48841 bp Ori: ENH38152.1 Feature: domain Description: DUF4062 Location: 47675-48002 bp Feature: domain Description: DUF4062 Location: 47675-48002 bp Feature: gene Location: 49550-50734 bp Ori: ENH38153.1 Feature: domain Description: PRK09692 Location: 49556-50711 bp Feature: domain Description: PRK09692 Location: 49556-50711 bp Feature: gene Location: 50727-52355 bp Ori: ENH38154.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51135-51564 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 51135-51564 bp Feature: gene Location: 52352-53092 bp Feature: gene Location: 53395-53967 bp Ori: ENH38156.1 Feature: domain Description: Psu Location: 53413-53950 bp Feature: domain Description: Psu Location: 53413-53950 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530), DUF4062 (pfam13271), PRK09692 (Integrase; provisional), RVT-UG7, Psu (pfam07455)