myRT

myRT report for GCA_000359075.1_ASM35907v1

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Seq: AQCB01000092.1 Escherichia coli p0305293.6 gecp03052936.contig.91, whole genome shotgun sequence (9273 bp)
Overview 1 RT 1: 1-3406 bp Neighborhood of RT #1 [1, 3492] RVT-GII Phage_integrase Feature: gene Location: 1-1198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286-973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286-973 bp Feature: gene Location: 2009-2698 bp Feature: gene Location: 2695-3492 bp Feature: domain Description: Phage_integrase Location: 2827-3406 bp Feature: domain Description: Phage_integrase Location: 2827-3406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Phage_integrase (pfam00589)

Seq: AQCB01000264.1 Escherichia coli p0305293.6 gecp03052936.contig.263, whole genome shotgun sequence (2750 bp)
Overview 1 RT 1: 1-2687 bp Neighborhood of RT #1 [1, 2710] RVT-GII rve_3 DDE_Tnp_IS66_C Feature: gene Location: 1-1198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 286-973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 86-973 bp Feature: gene Location: 2206-2493 bp Feature: domain Description: rve_3 Location: 2254-2335 bp Feature: domain Description: rve_3 Location: 2 2 54-2 335 bp Feature: gene Location: 2525-2710 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2579-2687 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 579-2 687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, rve_3 (pfam13683), DDE_Tnp_IS66_C (pfam13817)

Seq: AQCB01000346.1 Escherichia coli p0305293.6 gecp03052936.contig.345, whole genome shotgun sequence (6268 bp)
Overview 1 RT 1: 60-3329 bp Neighborhood of RT #1 [60, 3329] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 60-215 bp Feature: gene Location: 359-2026 bp Feature: RT Description: RVT_N Location: 407-644 bp Feature: RT Description: RVT_N Location: 407-644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-1337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 695-13 3 7 bp Feature: domain Description: GIIM Note: maturase Location: 1388-1622 bp Feature: domain Description: GIIM Note: maturase Location: 13 88-1622 bp Feature: domain Description: HNHc Note: nucleases Location: 1832-1991 bp Feature: domain Description: HNHc Note: nucleases Location: 183 2-1991 bp Feature: gene Location: 2661-2930 bp Feature: gene Location: 3192-3329 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQCB01000109.1 Escherichia coli p0305293.6 gecp03052936.contig.108, whole genome shotgun sequence (8649 bp)
Overview 1 RT 1: 1-3263 bp Neighborhood of RT #1 [1, 3328] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 1-277 bp Feature: gene Location: 321-671 bp Feature: domain Description: PHA02517 Location: 324-645 bp Feature: domain Description: PHA02517 Location: 324 -64 5 bp Feature: gene Location: 794-2302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1052-1784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1052-1784 bp Feature: domain Description: GIIM Note: maturase Location: 1859-2057 bp Feature: domain Description: GIIM Note: maturase Location: 1859-2057 bp Feature: gene Location: 2499-2612 bp Feature: gene Location: 2909-3328 bp Feature: domain Description: PHA02517 Location: 2924-3263 bp Feature: domain Description: PHA02517 Location: 2924 -3263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)