myRT

myRT report for GCA_000359095.2_ASM35909v2

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Seq: AQCC01000079.1 Escherichia coli p0305293.7 gecp03052937.contig.79, whole genome shotgun sequence (3043 bp)
Overview 1 RT 1: 105-2573 bp Neighborhood of RT #1 [105, 2731] RVT-GII GIIM DDE_Tnp_Tn3 rve_3 Feature: gene Location: 105-1436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-1077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 390-1 077 bp Feature: domain Description: GIIM Note: maturase Location: 1194-1362 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 94-1 362 bp Feature: gene Location: 1939-2130 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1942-2050 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 1 942-2050 bp Feature: gene Location: 2444-2731 bp Feature: domain Description: rve_3 Location: 2492-2573 bp Feature: domain Description: rve_3 Location: 2492-2573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526), rve_3 (pfam13683)

Seq: AQCC01000074.1 Escherichia coli p0305293.7 gecp03052937.contig.73, whole genome shotgun sequence (15493 bp)
Overview 1 RT 1: 453-2486 bp Neighborhood of RT #1 [453, 2596] RVT-GII GIIM D Ogr_Delta Feature: gene Location: 453-1784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 738-1425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 738-142 5 bp Feature: domain Description: GIIM Note: maturase Location: 1542-1710 bp Feature: domain Description: GIIM Note: maturase Location: 1542 -1710 bp Feature: gene Location: 1922-2293 bp Feature: domain Description: D Location: 1952-2267 bp Feature: domain Description: D Location: 1952 -2 2 67 bp Feature: gene Location: 2336-2596 bp Feature: domain Description: Ogr_Delta Location: 2345-2486 bp Feature: domain Description: Ogr_Delta Location: 2 345-2 486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT D (PHA02561), Ogr_Delta (pfam04606), RVT-GII, GIIM (pfam08388)

Seq: AQCC01000065.1 Escherichia coli p0305293.7 gecp03052937.contig.64, whole genome shotgun sequence (7929 bp)
Overview 1 RT 1: 2911-6811 bp Neighborhood of RT #1 [2911, 6811] PRK13732 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2911-3438 bp Feature: domain Description: PRK13732 Location: 2914-3436 bp Feature: domain Description: PRK13 73 2 Location: 2914-3 43 6 bp Feature: gene Location: 3736-4005 bp Feature: gene Location: 4640-6307 bp Feature: RT Description: RVT_N Location: 4688-4925 bp Feature: RT Description: RVT_N Location: 4688-4925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4976-5618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4976-5618 bp Feature: domain Description: GIIM Note: maturase Location: 5669-5903 bp Feature: domain Description: GIIM Note: maturase Location: 5669-5903 bp Feature: domain Description: HNHc Note: nucleases Location: 6113-6272 bp Feature: domain Description: HNHc Note: nucleases Location: 6113 -6272 bp Feature: gene Location: 6451-6606 bp Feature: gene Location: 6620-6811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: AQCC01000190.1 Escherichia coli p0305293.7 gecp03052937.contig.190, whole genome shotgun sequence (7231 bp)
Overview 1 RT 1: 269-6705 bp Neighborhood of RT #1 [269, 6779] Peptidase_S6 autotrans_barl RVT-GII GIIM Feature: gene Location: 269-385 bp Feature: gene Location: 555-4649 bp Feature: domain Description: Peptidase_S6 Location: 708-2892 bp Feature: domain Description: Peptidase_S6 Location: 708-2892 bp Feature: domain Description: autotrans_barl Location: 3426-4647 bp Feature: domain Description: autotrans_barl Location: 34 26-4 64 7 bp Feature: gene Location: 5448-6779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5733-6420 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5733-64 20 bp Feature: domain Description: GIIM Note: maturase Location: 6537-6705 bp Feature: domain Description: GIIM Note: maturase Location: 6537-6705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: AQCC01000130.1 Escherichia coli p0305293.7 gecp03052937.contig.130, whole genome shotgun sequence (18840 bp)
Overview 1 RT 1: 1-3663 bp Neighborhood of RT #1 [1, 3674] PRK09183 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1-291 bp Feature: domain Description: PRK09183 Location: 4-289 bp Feature: domain Description: PRK09183 Location: 4-289 bp Feature: gene Location: 335-685 bp Feature: domain Description: PHA02517 Location: 338-659 bp Feature: domain Description: PHA025 17 Location: 338-65 9 bp Feature: gene Location: 808-2316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-1798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1066-1798 bp Feature: domain Description: GIIM Note: maturase Location: 1873-2071 bp Feature: domain Description: GIIM Note: maturase Location: 1873-2071 bp Feature: gene Location: 2923-3342 bp Feature: domain Description: PHA02517 Location: 2938-3277 bp Feature: domain Description: PHA025 17 Location: 2938-3277 bp Feature: gene Location: 3390-3674 bp Feature: domain Description: InsE Location: 3402-3663 bp Feature: domain Description: InsE Location: 3402-3663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, GIIM (pfam08388)

Seq: AQCC01000154.1 Escherichia coli p0305293.7 gecp03052937.contig.154, whole genome shotgun sequence (7073 bp)
Overview 1 RT 1: 3344-6895 bp Neighborhood of RT #1 [3344, 6969] Phage_integrase RVT-GII GIIM Feature: gene Location: 3344-4141 bp Feature: domain Description: Phage_integrase Location: 3476-4055 bp Feature: domain Description: Phage_integrase Location: 3476 -4055 bp Feature: gene Location: 4138-4827 bp Feature: gene Location: 5638-6969 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5923-6610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5923-6 6 10 bp Feature: domain Description: GIIM Note: maturase Location: 6727-6895 bp Feature: domain Description: GIIM Note: maturase Location: 6 727-6 895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-GII, GIIM (pfam08388)