myRT

myRT report for GCA_000359125.1_ASM35912v1

Download annotations/find similar RTs

Seq: CAAF010000068.1 Mesorhizobium sp. STM 4661" WGS project data, contig ANY_1632_Contig_70, whole genome shotgun sequence (13797 bp)
Overview 1 RT 1: 266-4865 bp Neighborhood of RT #1 [266, 4873] UvrD pcrA RVT-UG12 COG3461 AraH Feature: gene Location: 266-1723 bp Gene: uvrD Feature: domain Description: UvrD Location: 269-1250 bp Feature: domain Description: UvrD Location: 269-1 250 bp Feature: domain Description: pcrA Location: 1577-1709 bp Feature: domain Description: pcrA Location: 1 577-1 709 bp Feature: gene Location: 1733-3427 bp Ori: CCV14760.1 Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 2156-2573 bp Feature: RT Description: RVT-UG1 2 Note: UG1 2 RT Location: 21 56-2573 bp Feature: gene Location: 3529-3717 bp Ori: CCV14761.1 Feature: domain Description: COG3461 Location: 3535-3709 bp Feature: domain Description: COG3461 Location: 3535-3709 bp Feature: gene Location: 3824-4873 bp Ori: CCV14762.1 Feature: domain Description: AraH Location: 3941-4865 bp Feature: domain Description: AraH Location: 3941 -4865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), pcrA (TIGR01073), RVT-UG12, COG3461 (Uncharacterized protein ), AraH (COG1172)

Seq: CAAF010000028.1 Mesorhizobium sp. STM 4661" WGS project data, contig ANY_1632_Contig_34, whole genome shotgun sequence (209828 bp)
Overview 1 RT 1: 99328-104668 bp Neighborhood of RT #1 [99328, 104706] WecG RVT-Retrons RfbX Feature: gene Location: 99328-100134 bp Ori: CCV11786.1 Feature: domain Description: WecG Location: 99376-100087 bp Feature: domain Description: WecG Location: 99376-100087 bp Feature: gene Location: 100131-101054 bp Feature: gene Location: 101108-102883 bp Ori: CCV11788.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 101264-101900 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1012 64-101900 bp Feature: gene Location: 103096-103170 bp Feature: gene Location: 103411-104706 bp Ori: CCV11790.1 Feature: domain Description: RfbX Location: 103483-104668 bp Feature: domain Description: RfbX Location: 103483-104668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WecG (COG1922), RVT-Retrons, RfbX (COG2244)

Seq: CAAF010000082.1 Mesorhizobium sp. STM 4661" WGS project data, contig ANY_1632_Contig_83, whole genome shotgun sequence (495360 bp)
Overview 1 RT 1: 238740-242978 bp Neighborhood of RT #1 [238740, 242983] Ubl_MoaD_like RVT-UG7 COG4324 Feature: gene Location: 238740-239051 bp Ori: CCV16043.1 Feature: domain Description: Ubl_MoaD_like Location: 238812-239049 bp Feature: domain Description: Ubl_MoaD_like Location: 23 8812-23 9049 bp Feature: gene Location: 239218-240024 bp Feature: gene Location: 239960-241621 bp Ori: CCV16045.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 240410-240827 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 240410-240827 bp Feature: gene Location: 241796-241864 bp Feature: gene Location: 241967-242983 bp Ori: CCV16047.1 Feature: domain Description: COG4324 Location: 241982-242978 bp Feature: domain Description: COG43 24 Location: 241982-242978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ubl_MoaD_like (cd17040), RVT-UG7, COG4324 (Predicted aminopeptidase )

Seq: CAAF010000027.1 Mesorhizobium sp. STM 4661" WGS project data, contig ANY_1632_Contig_33, whole genome shotgun sequence (182741 bp)
Overview 1 RT 1: 31121-35207 bp Neighborhood of RT #1 [31121, 35207] Spo0J PRTRC_parB group_II_RT_mat RVT-GII RVT-GII group_II_RT_mat Feature: gene Location: 31121-32851 bp Ori: CCV11492.1 Feature: domain Description: Spo0J Location: 31130-32054 bp Feature: domain Description: Spo0J Location: 31130-32054 bp Feature: domain Description: PRTRC_parB Location: 32405-32693 bp Feature: domain Description: PRTRC_parB Location: 324 05-32693 bp Feature: gene Location: 33394-33858 bp Ori: CCV11493.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 33397-33745 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 33397-3374 5 bp Feature: gene Location: 33858-34136 bp Ori: CCV11494.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33861-34101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33861-34 101 bp Feature: gene Location: 34081-34371 bp Ori: CCV11495.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34084-34306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 084 -34 306 bp Feature: gene Location: 34169-34714 bp Ori: CCV11496.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 34286-34439 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 34 286-34 4 39 bp Feature: gene Location: 34911-35207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Spo0J (COG1475), PRTRC_parB (TIGR03734), group_II_RT_mat (TIGR04416), RVT-GII